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Fam184a family with sequence similarity 184, member A [ Rattus norvegicus (Norway rat) ]

Gene ID: 361853, updated on 10-Oct-2024

Summary

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Official Symbol
Fam184aprovided by RGD
Official Full Name
family with sequence similarity 184, member Aprovided by RGD
Primary source
RGD:1311294
See related
EnsemblRapid:ENSRNOG00000026407 AllianceGenome:RGD:1311294
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1311294; Fam184a-ps1
Summary
Orthologous to human FAM184A (family with sequence similarity 184 member A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 64.4), Brain (RPKM 47.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Fam184a in Genome Data Viewer
Location:
20q11
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (33477089..33599296, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (32934424..33056626, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (34935029..35054806, complement)

Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase subunit B4, pseudogene 9 Neighboring gene minichromosome maintenance 9 homologous recombination repair factor Neighboring gene anti-silencing function 1A histone chaperone Neighboring gene minichromosome maintenance 9 homologous recombination repair factor like Neighboring gene small nucleolar RNA SNORA26 Neighboring gene uncharacterized LOC120098964 Neighboring gene mannosidase, alpha, class 1A, member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Comparison of tear protein levels in breast cancer patients and healthy controls using a de novo proteomic approach. Böhm D, et al. Oncol Rep, 2012 Aug. PMID 22664934, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in P-body ISO
Inferred from Sequence Orthology
more info
  
located_in centriolar satellite ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
protein FAM184A
Names
family with sequence similarity 184, member A, pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001427095.1 → NP_001414024.1  protein FAM184A

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000020
    UniProtKB/TrEMBL
    F1LW90
    Related
    ENSRNOP00000000475.9, ENSRNOT00000000475.9

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086038.1 Reference GRCr8

    Range
    33477089..33599296 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063279315.1 → XP_063135385.1  protein FAM184A isoform X14

  2. XM_039099322.2 → XP_038955250.1  protein FAM184A isoform X13

    UniProtKB/TrEMBL
    A6K499
    Conserved Domains (2) summary
    COG1196
    Location:47 → 314
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:129 → 529
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  3. XM_063279314.1 → XP_063135384.1  protein FAM184A isoform X11

  4. XM_039099319.2 → XP_038955247.1  protein FAM184A isoform X9

    UniProtKB/TrEMBL
    A0A8I6AX05
    Related
    ENSRNOP00000093426.1, ENSRNOT00000109090.2
    Conserved Domains (2) summary
    TIGR02168
    Location:161 → 916
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam15665
    Location:57 → 267
    FAM184; Family with sequence similarity 184, A and B

  5. XM_039099318.2 → XP_038955246.1  protein FAM184A isoform X8

    UniProtKB/TrEMBL
    A0A8I5ZS46
    Related
    ENSRNOP00000092174.2, ENSRNOT00000120309.2
    Conserved Domains (2) summary
    TIGR02168
    Location:226 → 959
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam15665
    Location:57 → 267
    FAM184; Family with sequence similarity 184, A and B

  6. XM_039099315.2 → XP_038955243.1  protein FAM184A isoform X5

    UniProtKB/TrEMBL
    A0A8I5ZWH8, A0A8I6AHN2
    Conserved Domains (2) summary
    TIGR02168
    Location:226 → 959
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam15665
    Location:57 → 267
    FAM184; Family with sequence similarity 184, A and B

  7. XM_063279312.1 → XP_063135382.1  protein FAM184A isoform X3

  8. XM_039099321.2 → XP_038955249.1  protein FAM184A isoform X12

    UniProtKB/TrEMBL
    A0A8I6A0I8
    Conserved Domains (2) summary
    TIGR02168
    Location:226 → 973
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam15665
    Location:57 → 267
    FAM184; Family with sequence similarity 184, A and B

  9. XM_039099316.2 → XP_038955244.1  protein FAM184A isoform X6

    UniProtKB/TrEMBL
    A0A8I5ZS46
    Conserved Domains (2) summary
    TIGR02168
    Location:226 → 973
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam15665
    Location:57 → 267
    FAM184; Family with sequence similarity 184, A and B

  10. XM_039099314.2 → XP_038955242.1  protein FAM184A isoform X4

    UniProtKB/TrEMBL
    A0A8I5ZWH8
    Conserved Domains (2) summary
    TIGR02168
    Location:226 → 973
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam15665
    Location:57 → 267
    FAM184; Family with sequence similarity 184, A and B

  11. XM_039099313.2 → XP_038955241.1  protein FAM184A isoform X2

    UniProtKB/TrEMBL
    A0A8I5ZS46
    Related
    ENSRNOP00000079991.2, ENSRNOT00000109149.2
    Conserved Domains (2) summary
    TIGR02168
    Location:226 → 1022
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam15665
    Location:57 → 267
    FAM184; Family with sequence similarity 184, A and B

  12. XM_008773015.3 → XP_008771237.2  protein FAM184A isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZWH8
    Conserved Domains (2) summary
    TIGR02168
    Location:226 → 1022
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam15665
    Location:57 → 267
    FAM184; Family with sequence similarity 184, A and B

  13. XM_039099317.2 → XP_038955245.1  protein FAM184A isoform X7

    UniProtKB/TrEMBL
    A0A8I6A0I8
    Conserved Domains (2) summary
    TIGR02168
    Location:226 → 1022
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam15665
    Location:57 → 267
    FAM184; Family with sequence similarity 184, A and B

  14. XM_039099323.2 → XP_038955251.1  protein FAM184A isoform X15

    UniProtKB/TrEMBL
    A6K499
    Conserved Domains (2) summary
    COG1196
    Location:1 → 244
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:59 → 459
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  15. XM_039099320.2 → XP_038955248.1  protein FAM184A isoform X10

    UniProtKB/TrEMBL
    A0A8I6A0I8
    Conserved Domains (2) summary
    TIGR02168
    Location:226 → 995
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam15665
    Location:57 → 267
    FAM184; Family with sequence similarity 184, A and B

RNA

  1. XR_005497785.2 RNA Sequence

  2. XR_005497786.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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