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Rnf44 ring finger protein 44 [ Rattus norvegicus (Norway rat) ]

Gene ID: 361212, updated on 2-Nov-2024

Summary

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Official Symbol
Rnf44provided by RGD
Official Full Name
ring finger protein 44provided by RGD
Primary source
RGD:1307212
See related
EnsemblRapid:ENSRNOG00000017641 AllianceGenome:RGD:1307212
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Orthologous to human RNF44 (ring finger protein 44). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Thymus (RPKM 72.9), Spleen (RPKM 64.6) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Rnf44 in Genome Data Viewer
Location:
17p14
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (9925100..9939496)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (9919982..9934376)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (10458036..10472410)

Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene G protein-regulated inducer of neurite outgrowth 1 Neighboring gene cadherin-related family member 2 Neighboring gene Fas associated factor family member 2 Neighboring gene clathrin, light chain B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
RING finger protein 44

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024795.1 → NP_001019966.1  RING finger protein 44

    See identical proteins and their annotated locations for NP_001019966.1

    Status: PROVISIONAL

    Source sequence(s)
    BC098030
    UniProtKB/Swiss-Prot
    Q4V7B8
    UniProtKB/TrEMBL
    A0A8I6ANS6, A6KAX7
    Related
    ENSRNOP00000057548.5, ENSRNOT00000060822.5
    Conserved Domains (1) summary
    pfam13639
    Location:298 → 339
    zf-RING_2; Ring finger domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086035.1 Reference GRCr8

    Range
    9925100..9939496
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006253634.5 → XP_006253696.1  RING finger protein 44 isoform X1

    See identical proteins and their annotated locations for XP_006253696.1

    UniProtKB/TrEMBL
    A0A0G2JTM4
    Conserved Domains (1) summary
    pfam13639
    Location:381 → 422
    zf-RING_2; Ring finger domain

  2. XM_017600594.3 → XP_017456083.1  RING finger protein 44 isoform X2

    UniProtKB/TrEMBL
    A0A8I6ANS6
    Conserved Domains (1) summary
    pfam13639
    Location:380 → 421
    zf-RING_2; Ring finger domain

  3. XM_006253633.5 → XP_006253695.1  RING finger protein 44 isoform X1

    See identical proteins and their annotated locations for XP_006253695.1

    UniProtKB/TrEMBL
    A0A0G2JTM4
    Conserved Domains (1) summary
    pfam13639
    Location:381 → 422
    zf-RING_2; Ring finger domain

  4. XM_063276556.1 → XP_063132626.1  RING finger protein 44 isoform X2

  5. XM_006253637.5 → XP_006253699.1  RING finger protein 44 isoform X1

    See identical proteins and their annotated locations for XP_006253699.1

    UniProtKB/TrEMBL
    A0A0G2JTM4
    Conserved Domains (1) summary
    pfam13639
    Location:381 → 422
    zf-RING_2; Ring finger domain

  6. XM_063276555.1 → XP_063132625.1  RING finger protein 44 isoform X1

  7. XM_017600593.3 → XP_017456082.1  RING finger protein 44 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JTM4
    Conserved Domains (1) summary
    pfam13639
    Location:381 → 422
    zf-RING_2; Ring finger domain

  8. XM_039095850.2 → XP_038951778.1  RING finger protein 44 isoform X3

    UniProtKB/TrEMBL
    A0A0G2JTM4, A0A8L2QTU2
    Related
    ENSRNOP00000068768.3, ENSRNOT00000089885.3
    Conserved Domains (1) summary
    cd16472
    Location:296 → 340
    RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins

  9. XM_006253644.5 → XP_006253706.1  RING finger protein 44 isoform X3

    See identical proteins and their annotated locations for XP_006253706.1

    UniProtKB/TrEMBL
    A0A0G2JTM4, A0A8L2QTU2
    Conserved Domains (1) summary
    cd16472
    Location:296 → 340
    RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4V7B8.1 GenPept UniProtKB/Swiss-Prot:Q4V7B8

Gene LinkOut

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