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Abcg3l2 ATP-binding cassette, subfamily G (WHITE), member 3-like 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 360910, updated on 17-Aug-2024

Summary

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Symbol
Abcg3l2provided by RGD
Full Name
ATP-binding cassette, subfamily G (WHITE), member 3-like 2provided by RGD
Primary source
RGD:1359703
See related
EnsemblRapid:ENSRNOG00000064381 AllianceGenome:RGD:1359703
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Spleen (RPKM 225.3), Liver (RPKM 213.5) and 9 other tissues See more
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Genomic context

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Location:
14p22
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (4798053..4847424, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (4493259..4538264, complement)

Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 8 VRAC subunit B Neighboring gene uncharacterized LOC108352839 Neighboring gene uncharacterized LOC134481817 Neighboring gene ATP-binding cassette, subfamily G (WHITE), member 3-like 4 Neighboring gene uncharacterized LOC120096559 Neighboring gene uncharacterized LOC134481816

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ATP-binding cassette, subfamily G (WHITE), member 3-like 2
Names
ATP-binding cassette, sub-family G (WHITE), member 3-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419101.1 → NP_001406030.1  ATP-binding cassette, subfamily G (WHITE), member 3-like 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000014
    UniProtKB/TrEMBL
    A0A8I5ZW97, A0A8I6A0D0
    Related
    ENSRNOP00000082989.1, ENSRNOT00000106658.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086032.1 Reference GRCr8

    Range
    4798053..4847424 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039092155.2 → XP_038948083.1  ATP-binding cassette, subfamily G (WHITE), member 3-like 2 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZW97, A0A8I6A0D0
    Conserved Domains (1) summary
    TIGR00955
    Location:54 → 632
    3a01204; The Eye Pigment Precursor Transporter (EPP) Family protein

  2. XM_063273322.1 → XP_063129392.1  ATP-binding cassette, subfamily G (WHITE), member 3-like 2 isoform X2

    UniProtKB/TrEMBL
    A0A0G2JTZ9, Q5U314

  3. XM_063273323.1 → XP_063129393.1  ATP-binding cassette, subfamily G (WHITE), member 3-like 2 isoform X3

    UniProtKB/TrEMBL
    A0A0G2JTZ9

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001014133.1: Suppressed sequence

    Description
    NM_001014133.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

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