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CYCSP52 CYCS pseudogene 52 [ Homo sapiens (human) ]

Gene ID: 360155, updated on 17-Sep-2024

Summary

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Official Symbol
CYCSP52provided by HGNC
Official Full Name
CYCS pseudogene 52provided by HGNC
Primary source
HGNC:HGNC:24393
See related
Ensembl:ENSG00000235700 AllianceGenome:HGNC:24393
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HC6; HCP2
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Genomic context

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See CYCSP52 in Genome Data Viewer
Location:
1q23.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (157128362..157128671)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (156265208..156265517)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (157098154..157098463)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:157044311-157044941 Neighboring gene keratin 8 pseudogene 45 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:157059291-157059812 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:157075101-157076062 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1886 Neighboring gene ETS variant transcription factor 3 like Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:157082931-157083555 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:157083556-157084181 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:157108646-157109251 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:157107959-157108294 Neighboring gene ETS variant transcription factor 3 Neighboring gene Sharpr-MPRA regulatory region 11922 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:157127246-157127757 Neighboring gene Sharpr-MPRA regulatory region 527 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:157142571-157143072 Neighboring gene uncharacterized LOC107985211 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1887 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:157163574-157163806 Neighboring gene uncharacterized LOC105371456 Neighboring gene NANOG hESC enhancer GRCh37_chr1:157243171-157243713 Neighboring gene CRISPRi-validated cis-regulatory element chr1.9249 Neighboring gene long intergenic non-protein coding RNA 2772

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The human somatic cytochrome c gene: two classes of processed pseudogenes demarcate a period of rapid molecular evolution. Evans MJ, et al. Proc Natl Acad Sci U S A, 1988 Dec. PMID 2849112, Free PMC Article
  2. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. Zhang Z, et al. Gene, 2003 Jul 17. PMID 12909341

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • cytochrome c, somatic pseudogene 52
  • somatic cytochrome c (HC6) processed pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_001560.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AF533163
    Related
    ENST00000422857.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    157128362..157128671
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    156265208..156265517
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
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Research Materials