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Tc00.1047053509683.117 40S ribosomal protein S4, putative [ Trypanosoma cruzi ]

Gene ID: 3547048, updated on 23-Nov-2023

Summary

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Gene symbol
Tc00.1047053509683.117
Gene description
40S ribosomal protein S4, putative
Locus tag
Tc00.1047053509683.117
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Trypanosoma cruzi (strain: CL Brener)
Lineage
Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Trypanosoma; Schizotrypanum
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Genomic context

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See Tc00.1047053509683.117 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_001849319.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene nucleobase transporter, putative Neighboring gene hypothetical protein Neighboring gene aminopeptidase, putative

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001849319.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020725
  2. Comparative genomics of trypanosomatid parasitic protozoa. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020724
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

  • heterozygous, non-Esmeraldo-like haplotype
    allele of Tc00.1047053511051.50

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
40S ribosomal protein S4, putative
XP_815346.1
  • heterozygous, non-Esmeraldo-like haplotype
    allele of Tc00.1047053511051.50

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001849319.1 Reference assembly

    Range
    43051..43872 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_810253.1 → XP_815346.1  40S ribosomal protein S4, putative [Trypanosoma cruzi]

    See identical proteins and their annotated locations for XP_815346.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    K2N9G5, O62594, Q4D5P4
    Conserved Domains (1) summary
    PTZ00223
    Location:1 → 273
    PTZ00223; 40S ribosomal protein S4; Provisional
Nucleotide Protein
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