U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CG31612 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 35427, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
CG31612provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0051612
Locus tag
Dmel_CG31612
See related
AllianceGenome:FB:FBgn0051612
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG11631; CG11632; Dmel\CG31612
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of nuclear cell cycle DNA replication and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in gonad; head mesoderm; and organism. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CG31612 in Genome Data Viewer
Location:
40A2-40A3; 2-54 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (21762314..21795447, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (21762314..21795447, complement)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene steppke Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR44269 Neighboring gene long non-coding RNA:CR44786

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Selective sweep analysis in the genomes of the 91-R and 91-C Drosophila melanogaster strains reveals few of the 'usual suspects' in dichlorodiphenyltrichloroethane (DDT) resistance. Steele LD, et al. PLoS One, 2015. PMID 25826265, Free PMC Article
  2. Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi. Mummery-Widmer JL, et al. Nature, 2009 Apr 23. PMID 19363474, Free PMC Article
  3. Genomics of Recombination Rate Variation in Temperature-Evolved Drosophila melanogaster Populations. Winbush A, et al. Genome Biol Evol, 2021 Jan 7. PMID 33247719, Free PMC Article
  4. The lipid-droplet proteome reveals that droplets are a protein-storage depot. Cermelli S, et al. Curr Biol, 2006 Sep 19. PMID 16979555
  5. Rapid and efficient cDNA library screening by self-ligation of inverse PCR products (SLIP). Hoskins RA, et al. Nucleic Acids Res, 2005 Dec 2. PMID 16326860, Free PMC Article

See all (30) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

mobile_element

  • Loc: c21769912-21769317 mobile_element_type = transposon:INE-1{}5398
  • Loc: c21775812-21775496 mobile_element_type = transposon:INE-1{}5400
  • Loc: c21781413-21781358 mobile_element_type = transposon:INE-1{}5404
  • Loc: c21785873-21785558 mobile_element_type = transposon:INE-1{}5405
  • Loc: c21788129-21788018 mobile_element_type = transposon:INE-1{}5407
  • Loc: c21794049-21793694 mobile_element_type = transposon:INE-1{}2263
  • Loc: c21794362-21794225 mobile_element_type = transposon:INE-1{}2262

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in positive regulation of nuclear cell cycle DNA replication ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein
Names
CG31612-PA
CG31612-PB

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    21762314..21795447 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_165400.3 → NP_724363.1  uncharacterized protein Dmel_CG31612, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_724363.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8SXJ5, Q9V9Q2
    Related
    FBpp0085262
    Conserved Domains (2) summary
    sd00017
    Location:731 → 750
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:910 → 935
    zf-H2C2_2; Zinc-finger double domain

  2. NM_001169571.2 → NP_001163042.1  uncharacterized protein Dmel_CG31612, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001163042.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8SXJ5, Q9V9Q2
    Conserved Domains (2) summary
    sd00017
    Location:731 → 750
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:910 → 935
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8SXJ5 Q8SXJ5
Q9V9Q2 Q9V9Q2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools