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AFUA_5G10530 extracellular rhamnogalacturonase, putative [ Aspergillus fumigatus Af293 ]

Gene ID: 3511456, updated on 31-Oct-2024

Summary

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Gene symbol
AFUA_5G10530
Gene description
extracellular rhamnogalacturonase, putative
Locus tag
AFUA_5G10530
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus fumigatus Af293 (strain: Af293)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Fumigati
Old locus tag
Afu5g10530
Orthologs
all
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Genomic context

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See AFUA_5G10530 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_007198.1 (2694101..2695858)

Chromosome 5 - NC_007198.1Genomic Context describing neighboring genes Neighboring gene alpha-1,2-mannosidase family protein Neighboring gene tRNA-Leu Neighboring gene tRNA-Lys Neighboring gene glycogen branching enzyme GbeA, putative

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007198.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus. Nierman WC, et al. Nature, 2005 Dec 22. PMID 16372009
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
extracellular rhamnogalacturonase, putative
XP_753591.1
  • encoded by transcript AFUA_5G10530A

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007198.1 Reference assembly

    Range
    2694101..2695858
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_748498.1 → XP_753591.1  extracellular rhamnogalacturonase, putative [Aspergillus fumigatus Af293]

    See identical proteins and their annotated locations for XP_753591.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    B0Y0Q3, Q4WV23
    UniProtKB/TrEMBL
    A0A229Y3B8
    Conserved Domains (2) summary
    pfam12708
    Location:43 → 269
    Pectate_lyase_3; Pectate lyase superfamily protein
    cl19188
    Location:43 → 377
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
Heading Accession and Version

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