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AFUA_1G16700 beta galactosidase, putative [ Aspergillus fumigatus Af293 ]

Gene ID: 3510063, updated on 31-Oct-2024

Summary

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Gene symbol
AFUA_1G16700
Gene description
beta galactosidase, putative
Locus tag
AFUA_1G16700
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus fumigatus Af293 (strain: Af293)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Fumigati
Old locus tag
Afu1g16700
Orthologs
all
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Genomic context

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See AFUA_1G16700 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_007194.1 (4545429..4548752, complement)

Chromosome 1 - NC_007194.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene MFS transporter, putative Neighboring gene fatty acid elongase (Gig30), putative Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007194.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus. Nierman WC, et al. Nature, 2005 Dec 22. PMID 16372009
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta galactosidase, putative
XP_753037.1
  • encoded by transcript AFUA_1G16700A

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007194.1 Reference assembly

    Range
    4545429..4548752 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_747944.1 → XP_753037.1  beta galactosidase, putative [Aspergillus fumigatus Af293]

    See identical proteins and their annotated locations for XP_753037.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    B0XNY2, Q4WRD3
    UniProtKB/TrEMBL
    A0A9P8NNJ1
    Conserved Domains (4) summary
    smart01029
    Location:402 → 583
    BetaGal_dom2; Beta-galactosidase, domain 2
    pfam13363
    Location:597 → 659
    BetaGal_dom3; Beta-galactosidase, domain 3
    pfam13364
    Location:858 → 976
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain
    cl38930
    Location:46 → 394
    AmyAc_family; Alpha amylase catalytic domain family
Nucleotide Protein
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