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AFUA_1G06910 arabinogalactan endo-1,4-beta-galactosidase GalA [ Aspergillus fumigatus Af293 ]

Gene ID: 3507699, updated on 30-Nov-2023

Summary

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Gene symbol
AFUA_1G06910
Gene description
arabinogalactan endo-1,4-beta-galactosidase GalA
Locus tag
AFUA_1G06910
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus fumigatus Af293 (strain: Af293)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Fumigati
Old locus tag
Afu1g06910
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Genomic context

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See AFUA_1G06910 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_007194.1 (1966085..1967290, complement)

Chromosome 1 - NC_007194.1Genomic Context describing neighboring genes Neighboring gene alpha-1,2-mannosyltransferase (Alg11), putative Neighboring gene C2H2 transcription factor Crz1, putative Neighboring gene serine/threonine protein kinase, putative Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007194.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus. Nierman WC, et al. Nature, 2005 Dec 22. PMID 16372009
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arabinogalactan endo-1,4-beta-galactosidase GalA
XP_750440.1
  • encoded by transcript AFUA_1G06910A
    similar to GB:CAC83735.1: endo-1,4-beta-galactanase [Aspergillus niger] PMID: 12383257 similar to Arabinogalactan endo-1,4-beta-galactosidase precursor (Swiss-Prot:P48842) [Aspergillus aculeatus] PubMed 7788716, 12761390, 12484750

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007194.1 Reference assembly

    Range
    1966085..1967290 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_745347.1 → XP_750440.1  arabinogalactan endo-1,4-beta-galactosidase GalA [Aspergillus fumigatus Af293]

    See identical proteins and their annotated locations for XP_750440.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q4WJ80
    UniProtKB/TrEMBL
    A0A9P8SSW3
    Conserved Domains (1) summary
    pfam07745
    Location:50 → 378
    Glyco_hydro_53; Glycosyl hydrolase family 53
Nucleotide Protein
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