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OT_ostta13g02800 ABC transporter, ABCE [ Ostreococcus tauri ]

Gene ID: 34946346, updated on 16-Nov-2023

Summary

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Gene symbol
OT_ostta13g02800
Gene description
ABC transporter, ABCE
Locus tag
OT_ostta13g02800
Gene type
protein coding
RNA name
ABC transporter, ABCE
RefSeq status
PROVISIONAL
Organism
Ostreococcus tauri (strain: RCC4221)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Genomic context

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See OT_ostta13g02800 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
1
Sequence:
Chromosome: 13; NC_014438.2 (492568..494400)

Chromosome 13 - NC_014438.2Genomic Context describing neighboring genes Neighboring gene Armadillo-type fold Neighboring gene Arf GTPase activating protein Neighboring gene unnamed product Neighboring gene Oxoglutarate/iron-dependent dioxygenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_014438.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies. Blanc-Mathieu R, et al. BMC Genomics, 2014 Dec 13. PMID 25494611, Free PMC Article
  2. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Derelle E, et al. Proc Natl Acad Sci U S A, 2006 Aug 1. PMID 16868079, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosomal small subunit binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosomal subunit export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translational termination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
ABC transporter, ABCE

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_014438.2 Reference assembly

    Range
    492568..494400
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022982764.1 → XP_022840256.1  ABC transporter, ABCE [Ostreococcus tauri]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A096P889
    Conserved Domains (1) summary
    cl28181
    Location:13 → 606
    AAA; ATPases associated with a variety of cellular activities
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases