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CCDC160 coiled-coil domain containing 160 [ Homo sapiens (human) ]

Gene ID: 347475, updated on 17-Sep-2024

Summary

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Official Symbol
CCDC160provided by HGNC
Official Full Name
coiled-coil domain containing 160provided by HGNC
Primary source
HGNC:HGNC:37286
See related
Ensembl:ENSG00000203952 AllianceGenome:HGNC:37286
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in salivary gland (RPKM 3.1), kidney (RPKM 2.6) and 11 other tissues See more
Orthologs
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Genomic context

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See CCDC160 in Genome Data Viewer
Location:
Xq26.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (134237182..134246842)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (132562356..132572021)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (133371212..133380872)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:133306183-133306990 Neighboring gene Sharpr-MPRA regulatory region 650 Neighboring gene miR-106a-363 cluster host gene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:133314265-133314827 Neighboring gene microRNA 106a Neighboring gene LARP1B pseudogene 3 Neighboring gene NANOG hESC enhancer GRCh37_chrX:133374068-133374687 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:133381318-133381517 Neighboring gene NT5DC1 pseudogene 2 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:133515535-133515735 Neighboring gene PHD finger protein 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-Wide Association Study of Primary Dentition Pit-and-Fissure and Smooth Surface Caries.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
coiled-coil domain-containing protein 160
Names
UPF0625 coiled-coil domain-containing protein ENSP00000359845

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001101357.3 → NP_001094827.1  coiled-coil domain-containing protein 160

    See identical proteins and their annotated locations for NP_001094827.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 all encode the same protein.
    Source sequence(s)
    AC004409, KF459428
    Consensus CDS
    CCDS48171.1
    UniProtKB/Swiss-Prot
    A6NGH7
    Related
    ENSP00000359845.4, ENST00000370809.5

  2. NM_001353453.3 → NP_001340382.1  coiled-coil domain-containing protein 160

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1, 2 and 3 all encode the same protein.
    Source sequence(s)
    AC004409, KF459428
    Consensus CDS
    CCDS48171.1
    UniProtKB/Swiss-Prot
    A6NGH7
    Related
    ENSP00000511932.1, ENST00000695460.1

  3. NM_001393996.1 → NP_001380925.1  coiled-coil domain-containing protein 160

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 all encode the same protein.
    Source sequence(s)
    AC004409, KF459428
    Consensus CDS
    CCDS48171.1
    UniProtKB/Swiss-Prot
    A6NGH7
    Related
    ENSP00000427951.1, ENST00000517294.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    134237182..134246842
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    132562356..132572021
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A6NGH7.3 GenPept UniProtKB/Swiss-Prot:A6NGH7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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