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CCDC160 coiled-coil domain containing 160 [ Homo sapiens (human) ]

Gene ID: 347475, updated on 5-Mar-2024

Summary

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Official Symbol
CCDC160provided by HGNC
Official Full Name
coiled-coil domain containing 160provided by HGNC
Primary source
HGNC:HGNC:37286
See related
Ensembl:ENSG00000203952 AllianceGenome:HGNC:37286
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in salivary gland (RPKM 3.1), kidney (RPKM 2.6) and 11 other tissues See more
Orthologs
mouse all
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Genomic context

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See CCDC160 in Genome Data Viewer
Location:
Xq26.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (134237182..134246842)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (132562356..132572021)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (133371212..133380872)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:133306183-133306990 Neighboring gene Sharpr-MPRA regulatory region 650 Neighboring gene miR-106a-363 cluster host gene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:133314265-133314827 Neighboring gene microRNA 106a Neighboring gene LARP1B pseudogene 3 Neighboring gene NANOG hESC enhancer GRCh37_chrX:133374068-133374687 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:133381318-133381517 Neighboring gene NT5DC1 pseudogene 2 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:133515535-133515735 Neighboring gene PHD finger protein 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries. Zeng Z, et al. Caries Res, 2014. PMID 24556642, Free PMC Article
  2. The DNA sequence of the human X chromosome. Ross MT, et al. Nature, 2005 Mar 17. PMID 15772651, Free PMC Article
  3. The midbody interactome reveals unexpected roles for PP1 phosphatases in cytokinesis. Capalbo L, et al. Nat Commun, 2019 Oct 4. PMID 31586073, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-Wide Association Study of Primary Dentition Pit-and-Fissure and Smooth Surface Caries.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
coiled-coil domain-containing protein 160
Names
UPF0625 coiled-coil domain-containing protein ENSP00000359845

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001101357.3 → NP_001094827.1  coiled-coil domain-containing protein 160

    See identical proteins and their annotated locations for NP_001094827.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 all encode the same protein.
    Source sequence(s)
    AC004409, KF459428
    Consensus CDS
    CCDS48171.1
    UniProtKB/Swiss-Prot
    A6NGH7
    Related
    ENSP00000359845.4, ENST00000370809.5

  2. NM_001353453.3 → NP_001340382.1  coiled-coil domain-containing protein 160

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1, 2 and 3 all encode the same protein.
    Source sequence(s)
    AC004409, KF459428
    Consensus CDS
    CCDS48171.1
    UniProtKB/Swiss-Prot
    A6NGH7
    Related
    ENSP00000511932.1, ENST00000695460.1

  3. NM_001393996.1 → NP_001380925.1  coiled-coil domain-containing protein 160

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 all encode the same protein.
    Source sequence(s)
    AC004409, KF459428
    Consensus CDS
    CCDS48171.1
    UniProtKB/Swiss-Prot
    A6NGH7
    Related
    ENSP00000427951.1, ENST00000517294.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    134237182..134246842
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    132562356..132572021
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A6NGH7.3 GenPept UniProtKB/Swiss-Prot:A6NGH7

Gene LinkOut

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