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LOC345571 RUN and FYVE domain containing 3 pseudogene [ Homo sapiens (human) ]

Gene ID: 345571, updated on 17-Sep-2024

Summary

Gene symbol
LOC345571
Gene description
RUN and FYVE domain containing 3 pseudogene
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See LOC345571 in Genome Data Viewer
Location:
5q21.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (106416099..106417453, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (106920619..106921971, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (105751800..105753154, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379110 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:104727399-104728228 Neighboring gene MPRA-validated peak5387 silencer Neighboring gene Sharpr-MPRA regulatory region 1662 Neighboring gene NANOG hESC enhancer GRCh37_chr5:105275636-105276417 Neighboring gene RNA, 5S ribosomal pseudogene 189 Neighboring gene MPRA-validated peak5393 silencer Neighboring gene MPRA-validated peak5394 silencer Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:105590357-105590959 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:105758794-105759294 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:105766194-105766694 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:105766695-105767195 Neighboring gene zinc finger protein 736 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:105920305-105920824 Neighboring gene NANOG hESC enhancer GRCh37_chr5:106090731-106091273 Neighboring gene long intergenic non-protein coding RNA 1950 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:106314019-106314772 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:106319287-106320038

Genomic regions, transcripts, and products

Phenotypes

EBI GWAS Catalog

Description
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_021859.2 

    Range
    1..1355
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    106416099..106417453 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    106920619..106921971 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)