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CYCSP42 CYCS pseudogene 42 [ Homo sapiens (human) ]

Gene ID: 343727, updated on 17-Sep-2024

Summary

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Official Symbol
CYCSP42provided by HGNC
Official Full Name
CYCS pseudogene 42provided by HGNC
Primary source
HGNC:HGNC:2581
See related
Ensembl:ENSG00000224524 AllianceGenome:HGNC:2581
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HCP42; CYC1LP5
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Genomic context

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See CYCSP42 in Genome Data Viewer
Location:
21q21.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (15490524..15490782, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (13845980..13846238, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (16862843..16863101, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369292 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:16662777-16663306 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr21:16665453-16666075 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:16698845-16699655 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr21:16738058-16739257 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:16739664-16740201 Neighboring gene uncharacterized LOC101927745 Neighboring gene uncharacterized LOC124905055 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr21:16817247-16818016 Neighboring gene Sharpr-MPRA regulatory region 2263 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13218 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:16860730-16860938 Neighboring gene uncharacterized LOC105369302 Neighboring gene uncharacterized LOC124905056 Neighboring gene RNA, U6 small nuclear 1326, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. Zhang Z, et al. Gene, 2003 Jul 17. PMID 12909341
  2. The DNA sequence of human chromosome 21. Hattori M, et al. Nature, 2000 May 18. PMID 10830953

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • cytochrome C pseudogene
  • cytochrome c, somatic pseudogene 42
  • cytochrome c-1-like pseudogene 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_002991.2 

    Range
    101..359
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    15490524..15490782 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    13845980..13846238 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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