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ANKRD33 ankyrin repeat domain 33 [ Homo sapiens (human) ]

Gene ID: 341405, updated on 5-Mar-2024

Summary

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Official Symbol
ANKRD33provided by HGNC
Official Full Name
ankyrin repeat domain 33provided by HGNC
Primary source
HGNC:HGNC:13788
See related
Ensembl:ENSG00000167612 AllianceGenome:HGNC:13788
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PANKY; C12orf7
Summary
Predicted to be involved in negative regulation of transcription by RNA polymerase II and negative regulation of transcription regulatory region DNA binding activity. Predicted to act upstream of or within skeletal muscle cell differentiation. Predicted to be located in cytosol and nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in placenta (RPKM 1.3) and testis (RPKM 0.1) See more
Orthologs
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Genomic context

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Location:
12q13.13
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (51888103..51891727)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (51851678..51855302)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (52281887..52285511)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4473 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:52208409-52208908 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4474 Neighboring gene transmembrane and death domain 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:52220360-52220860 Neighboring gene fidgetin like 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:52221534-52222085 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:52223188-52223737 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:52229864-52230815 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:52238698-52239408 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:52239409-52240117 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:52240828-52241536 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:52241735-52242726 Neighboring gene FIGNL2 divergent transcript Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:52256788-52257308 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:52262827-52263460 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:52263461-52264092 Neighboring gene filamin-B-like Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:52301449-52301957 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:52307107-52307940 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:52308586-52309472 Neighboring gene activin A receptor like type 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:52311731-52312303 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6385

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Panky, a novel photoreceptor-specific ankyrin repeat protein, is a transcriptional cofactor that suppresses CRX-regulated photoreceptor genes. Sanuki R, et al. FEBS Lett, 2010 Feb 19. PMID 20026326
  2. Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia. McClay JL, et al. Neuropsychopharmacology, 2011 Feb. PMID 21107309, Free PMC Article
  3. The finished DNA sequence of human chromosome 12. Scherer SE, et al. Nature, 2006 Mar 16. PMID 16541075
  4. A reference map of the human binary protein interactome. Luck K, et al. Nature, 2020 Apr. PMID 32296183, Free PMC Article
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • DKFZp686O1689

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in skeletal muscle cell differentiation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
photoreceptor ankyrin repeat protein
Names
ankyrin repeat domain-containing protein 33

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001130015.2 → NP_001123487.1  photoreceptor ankyrin repeat protein isoform 1

    See identical proteins and their annotated locations for NP_001123487.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) lacks one internal exon and an internal segment in the coding region, compared to variant 3. The resulting isoform (1) lacks two internal segments, compared to isoform 3.
    Source sequence(s)
    AC025259, AF517120, BC121152, BC121153
    Consensus CDS
    CCDS44892.1
    UniProtKB/Swiss-Prot
    Q7Z3H0
    UniProtKB/TrEMBL
    Q0VAA8, Q5K617
    Related
    ENSP00000344690.4, ENST00000340970.8
    Conserved Domains (2) summary
    cd00204
    Location:1 → 115
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:29 → 62
    ANK; ANK repeat [structural motif]

  2. NM_001304459.2 → NP_001291388.1  photoreceptor ankyrin repeat protein isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) represents the longest transcript and encodes a 348aa protein (isoform 3).
    Source sequence(s)
    AC025259, AF517120, AK125517, BC121152, BX649168
    UniProtKB/Swiss-Prot
    Q7Z3H0
    UniProtKB/TrEMBL
    Q0VAA8, Q5K617
    Conserved Domains (3) summary
    cd00204
    Location:1 → 136
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam13857
    Location:14 → 72
    Ank_5; Ankyrin repeats (many copies)
    sd00045
    Location:29 → 62
    ANK; ANK repeat [structural motif]

  3. NM_001304460.2 → NP_001291389.1  photoreceptor ankyrin repeat protein isoform 4

    See identical proteins and their annotated locations for NP_001291389.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two internal exons and an internal segment, compared to variant 3. The resulting isoform (4) is shorter at the N-terminus and lacks two internal segments, compared to isoform 3.
    Source sequence(s)
    AC025259, AF517120, BC121152
    UniProtKB/TrEMBL
    Q0VAA8
    Conserved Domains (2) summary
    cd00204
    Location:1 → 55
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:1 → 46
    Ank_2; Ankyrin repeats (3 copies)

  4. NM_182608.4 → NP_872414.3  photoreceptor ankyrin repeat protein isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has two alternate splice sites and lacks an internal exon in the coding region, compared to variant 3. The resulting isoform (2) is the longest isoform, which is longer at the N-terminus and lacks an internal segment, compared to isoform 3.
    Source sequence(s)
    AC025259, AF517120, AK125517, BC121152, BC121153, BX649168
    Consensus CDS
    CCDS8815.1
    UniProtKB/Swiss-Prot
    Q0VAA7, Q5K619, Q5K621, Q5K622, Q5K623, Q5K624, Q6ZUN0, Q7Z3H0
    Related
    ENSP00000301190.6, ENST00000301190.11
    Conserved Domains (2) summary
    cd00204
    Location:98 → 212
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:98 → 128
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    51888103..51891727
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047428783.1 → XP_047284739.1  photoreceptor ankyrin repeat protein isoform X3

  2. XM_047428782.1 → XP_047284738.1  photoreceptor ankyrin repeat protein isoform X1

  3. XM_017019258.2 → XP_016874747.1  photoreceptor ankyrin repeat protein isoform X2

  4. XM_047428784.1 → XP_047284740.1  photoreceptor ankyrin repeat protein isoform X4

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    51851678..51855302
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054371949.1 → XP_054227924.1  photoreceptor ankyrin repeat protein isoform X3

  2. XM_054371947.1 → XP_054227922.1  photoreceptor ankyrin repeat protein isoform X1

  3. XM_054371950.1 → XP_054227925.1  photoreceptor ankyrin repeat protein isoform X4

  4. XM_054371948.1 → XP_054227923.1  photoreceptor ankyrin repeat protein isoform X2

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7Z3H0.4 GenPept UniProtKB/Swiss-Prot:Q7Z3H0

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