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LINC02120 long intergenic non-protein coding RNA 2120 [ Homo sapiens (human) ]

Gene ID: 340113, updated on 10-Oct-2023

Summary

Official Symbol
LINC02120provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2120provided by HGNC
Primary source
HGNC:HGNC:27971
See related
Ensembl:ENSG00000248279 AllianceGenome:HGNC:27971
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02120 in Genome Data Viewer
Location:
5p13.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (32947443..32962467)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (33062471..33077493)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (32947549..32962573)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 158 Neighboring gene natriuretic peptide receptor 3 Neighboring gene NPR3 intron CAGE-defined low expression enhancer Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:32767828-32769027 Neighboring gene uncharacterized LOC124900956 Neighboring gene uncharacterized LOC124900955 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:32933642-32934142 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:32970338-32970603 Neighboring gene uncharacterized LOC105374715 Neighboring gene NANOG hESC enhancer GRCh37_chr5:33008763-33009264 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:33092903-33093402 Neighboring gene ribosomal protein S8 pseudogene 8

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033832.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    BC044935
    Related
    ENST00000505518.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    32947443..32962467
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    33062471..33077493
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)