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LOC340090 uncharacterized LOC340090 [ Homo sapiens (human) ]

Gene ID: 340090, updated on 10-Oct-2023

Summary

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Gene symbol
LOC340090
Gene description
uncharacterized LOC340090
See related
Ensembl:ENSG00000287090
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5q13.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (73195290..73201961, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (73676624..73683276, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (72491117..72497788, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S3-like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:72451076-72451576 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:72451577-72452077 Neighboring gene transmembrane protein 174 Neighboring gene uncharacterized LOC124901002 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16087 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:72525833-72526458 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:72528715-72529663 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:72542107-72542607 Neighboring gene uncharacterized LOC105379031 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:72584413-72585257 Neighboring gene NANOG hESC enhancer GRCh37_chr5:72586501-72587002 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:72617235-72618434 Neighboring gene long intergenic non-protein coding RNA 2230

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134291.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC043557
    Related
    ENST00000664281.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    73195290..73201961 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    73676624..73683276 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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