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LINC01343 long intergenic non-protein coding RNA 1343 [ Homo sapiens (human) ]

Gene ID: 339442, updated on 13-Nov-2023

Summary

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Official Symbol
LINC01343provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1343provided by HGNC
Primary source
HGNC:HGNC:50553
See related
Ensembl:ENSG00000237290 AllianceGenome:HGNC:50553
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
1p34.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (38209034..38214767, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (38076242..38081975, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (38674706..38680439, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene MIR3659 host gene Neighboring gene VISTA enhancer hs238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38579645-38580510 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38581621-38582121 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38582797-38583340 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38583341-38583883 Neighboring gene microRNA 3659 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:38590116-38590297 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38594298-38594798 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38605789-38606702 Neighboring gene uncharacterized LOC105378654 Neighboring gene long intergenic non-protein coding RNA 2786 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 788 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 790 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 792 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 791 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 789 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38671184-38671684 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38704546-38705076 Neighboring gene VISTA enhancer hs1001 Neighboring gene VISTA enhancer hs2088 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38736051-38736648 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:38736899-38737076 Neighboring gene uncharacterized LOC105378657 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38827443-38827961 Neighboring gene VISTA enhancer hs1546 Neighboring gene tubulin beta 6 class V pseudogene 1 Neighboring gene RNA, U6 small nuclear 753, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Quantitative Expression of SFN, lncRNA CCDC18-AS1, and lncRNA LINC01343 in Human Breast Cancer as the Regulator Biomarkers in a Novel ceRNA Network: Based on Bioinformatics and Experimental Analyses. Rishehri M, et al. Genet Res (Camb), 2022. PMID 36160032, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LINC01343 targets miR-526b-5p to facilitate the development of hepatocellular carcinoma by upregulating ROBO1.
    Title: LINC01343 targets miR-526b-5p to facilitate the development of hepatocellular carcinoma by upregulating ROBO1.
  2. Quantitative Expression of SFN, lncRNA CCDC18-AS1, and lncRNA LINC01343 in Human Breast Cancer as the Regulator Biomarkers in a Novel ceRNA Network: Based on Bioinformatics and Experimental Analyses.
    Title: Quantitative Expression of SFN, lncRNA CCDC18-AS1, and lncRNA LINC01343 in Human Breast Cancer as the Regulator Biomarkers in a Novel ceRNA Network: Based on Bioinformatics and Experimental Analyses.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038928.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL390839, BC042675, BI827914
    Related
    ENST00000431311.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    38209034..38214767 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    38076242..38081975 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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