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PKD1P3 polycystin 1, transient receptor potential channel interacting pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 339039, updated on 17-Sep-2024

Summary

Official Symbol
PKD1P3provided by HGNC
Official Full Name
polycystin 1, transient receptor potential channel interacting pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:30067
See related
Ensembl:ENSG00000183458 AllianceGenome:HGNC:30067
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HG3
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Genomic context

See PKD1P3 in Genome Data Viewer
Location:
16p13.11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (14917534..14935708)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (14915933..14925758)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (15011391..15029565)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927469 Neighboring gene PKD1P3-NPIPA1 readthrough Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:15007259-15008046 Neighboring gene microRNA 3670-1 Neighboring gene microRNA 3180-1 Neighboring gene uncharacterized LOC100288162 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:15023765-15024578 Neighboring gene microRNA 6511a-1 Neighboring gene microRNA 6770-1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:15041221-15041722 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:15041723-15042222 Neighboring gene nuclear pore complex interacting protein family member A1 Neighboring gene Sharpr-MPRA regulatory region 4661 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:15068201-15068964 Neighboring gene pyridoxal dependent decarboxylase domain containing 1 Neighboring gene KIAA2013 pseudogene

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_002796.5 

    Range
    101..18275
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    14917534..14935708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    14915933..14925758
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)