U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SNORD109A small nucleolar RNA, C/D box 109A [ Homo sapiens (human) ]

Gene ID: 338428, updated on 10-Oct-2023

Summary

Official Symbol
SNORD109Aprovided by HGNC
Official Full Name
small nucleolar RNA, C/D box 109Aprovided by HGNC
Primary source
HGNC:HGNC:32773
See related
Ensembl:ENSG00000274640 AllianceGenome:HGNC:32773
Gene type
snoRNA
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HBII-438A
Summary
This gene encodes a C/D box-type small nucleolar RNA that is expressed predominantly in the brain. Expression of this RNA is not detectable in the brains of patients with Prader-Willi syndrome. [provided by RefSeq, Jun 2010]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See SNORD109A in Genome Data Viewer
Location:
15q11.2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (25041974..25042040)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (22778635..22778701)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (25287121..25287187)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA host gene 14 Neighboring gene small nucleolar RNA, C/D box 108 Neighboring gene Sharpr-MPRA regulatory region 7323 Neighboring gene Prader Willi/Angelman region RNA 5 Neighboring gene small nucleolar RNA, C/D box 116-1 Neighboring gene small nucleolar RNA, C/D box 116-2 Neighboring gene Prader Willi/Angelman region RNA 6

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Other Names

  • HBII-438A C/D box snoRNA

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_001295.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AY055808
    Related
    ENST00000459128.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    25041974..25042040
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    22778635..22778701
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)