U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

cgd6_3850 HOI-POLLOI protein; U4/U6.U5 snRNP component; Snu13p; pelota RNA binding domain containing protein [ Cryptosporidium parvum Iowa II ]

Gene ID: 3375738, updated on 17-May-2024

Summary

Go to the top of the page Help
Gene symbol
cgd6_3850
Gene description
HOI-POLLOI protein; U4/U6.U5 snRNP component; Snu13p; pelota RNA binding domain containing protein
Locus tag
cgd6_3850
See related
ApiDB_CryptoDB:cgd6_3850; CryptoDB:cgd6_3850; VEuPathDB:cgd6_3850
Gene type
protein coding
RNA name
HOI-POLLOI protein; U4/U6.U5 snRNP component; Snu13p; pelota RNA binding domain containing protein
RefSeq status
PROVISIONAL
Organism
Cryptosporidium parvum Iowa II (isolate: Iowa type II)
Lineage
Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Cryptosporidiidae; Cryptosporidium
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 6
Exon count:
1
Sequence:
Chromosome: 6; NC_006985.1 (896484..896888, complement)

Chromosome 6 - NC_006985.1Genomic Context describing neighboring genes Neighboring gene rab1a protein Neighboring gene SET domain containing protein Neighboring gene SNF2 helicase Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_006985.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Complete genome sequence of the apicomplexan, Cryptosporidium parvum. Abrahamsen MS, et al. Science, 2004 Apr 16. PMID 15044751
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of box C/D methylation guide snoRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Names
HOI-POLLOI protein; U4/U6.U5 snRNP component; Snu13p; pelota RNA binding domain containing protein
XP_627723.1
  • transcripts identified by EST

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006985.1 Reference assembly

    Range
    896484..896888 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_627723.1 → XP_627723.1  HOI-POLLOI protein; U4/U6.U5 snRNP component; Snu13p; pelota RNA binding domain containing protein [Cryptosporidium parvum Iowa II]

    See identical proteins and their annotated locations for XP_627723.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7G2HK80, Q5CWT1
    Conserved Domains (1) summary
    cd21104
    Location:13 → 134
    SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials