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cgd3_2620 DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit, long PHYSPTS repeat [ Cryptosporidium parvum Iowa II ]

Gene ID: 3373777, updated on 17-May-2024

Summary

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Gene symbol
cgd3_2620
Gene description
DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit, long PHYSPTS repeat
Locus tag
cgd3_2620
See related
ApiDB_CryptoDB:cgd3_2620; CryptoDB:cgd3_2620; VEuPathDB:cgd3_2620
Gene type
protein coding
RNA name
putative DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit, long PHYSPTS repeat at C-terminus
RefSeq status
PROVISIONAL
Organism
Cryptosporidium parvum Iowa II (isolate: Iowa type II)
Lineage
Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Cryptosporidiidae; Cryptosporidium
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_006982.1 (662428..668136)

Chromosome 3 - NC_006982.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene diacylglycerol kinase Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_006982.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete genome sequence of the apicomplexan, Cryptosporidium parvum. Abrahamsen MS, et al. Science, 2004 Apr 16. PMID 15044751
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit, long PHYSPTS repeat

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006982.1 Reference assembly

    Range
    662428..668136
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_626822.1 → XP_626822.1  DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit, long PHYSPTS repeat at

    See identical proteins and their annotated locations for XP_626822.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7S7LHU4, Q5CUJ2
    Conserved Domains (7) summary
    cd02584
    Location:1091 → 1519
    RNAP_II_Rpb1_C; Largest subunit (Rpb1) of Eukaryotic RNA polymerase II (RNAP II), C-terminal domain
    PRK08566
    Location:24 → 907
    PRK08566; DNA-directed RNA polymerase subunit A'; Validated
    pfam04554
    Location:1708 → 1764
    Extensin_2; Extensin-like region
    cd02733
    Location:28 → 888
    RNAP_II_RPB1_N; Largest subunit (Rpb1) of eukaryotic RNA polymerase II (RNAP II), N-terminal domain
    pfam04992
    Location:908 → 1111
    RNA_pol_Rpb1_6; RNA polymerase Rpb1, domain 6
    pfam04998
    Location:842 → 1471
    RNA_pol_Rpb1_5; RNA polymerase Rpb1, domain 5
    cl23807
    Location:1742 → 1818
    WWbp; WW-domain ligand protein
Nucleotide Protein
Heading Accession and Version

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