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chid1 chitinase domain containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 337225, updated on 28-Oct-2024

Summary

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Official Symbol
chid1provided by ZNC
Official Full Name
chitinase domain containing 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-9169
See related
Ensembl:ENSDARG00000069673 AllianceGenome:ZFIN:ZDB-GENE-030131-9169
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb02e07; zgc:66396; wu:fb02e07
Summary
Predicted to enable oligosaccharide binding activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in extracellular region and lysosome. Predicted to be active in endomembrane system. Is expressed in hatching gland; notochord; and polster. Orthologous to human CHID1 (chitinase domain containing 1). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
human mouse all
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Genomic context

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See chid1 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (3788172..3800889)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (3662513..3675230)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene MORC family CW-type zinc finger 2 Neighboring gene zgc:158398 Neighboring gene THO complex 5 Neighboring gene glutamine amidotransferase class 1 domain containing 1 Neighboring gene CD151 molecule Neighboring gene calcium release activated channel regulator 2B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. New paralogues and revised time line in the expansion of the vertebrate GH18 family. Hussain M, et al. J Mol Evol, 2013 Apr. PMID 23558346
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
  
enables oligosaccharide binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in endomembrane system IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in lysosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
chitinase domain-containing protein 1
NP_956351.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200057.1 → NP_956351.1  chitinase domain-containing protein 1 precursor

    See identical proteins and their annotated locations for NP_956351.1

    Status: PROVISIONAL

    Source sequence(s)
    BC054696
    UniProtKB/Swiss-Prot
    Q7SYK0
    Related
    ENSDARP00000129029.1, ENSDART00000154008.2
    Conserved Domains (2) summary
    cd02876
    Location:76 → 391
    GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...
    smart00636
    Location:80 → 382
    Glyco_18; Glyco_18 domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    3788172..3800889
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7SYK0.1 GenPept UniProtKB/Swiss-Prot:Q7SYK0

Gene LinkOut

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