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cgd7_2060 vacuolar protein sorting 29 [ Cryptosporidium parvum Iowa II ]

Gene ID: 3371886, updated on 17-May-2024

Summary

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Gene symbol
cgd7_2060
Gene description
vacuolar protein sorting 29
Locus tag
cgd7_2060
See related
ApiDB_CryptoDB:cgd7_2060; CryptoDB:cgd7_2060; VEuPathDB:cgd7_2060
Gene type
protein coding
RNA name
vacuolar protein sorting 29
RefSeq status
PROVISIONAL
Organism
Cryptosporidium parvum Iowa II (isolate: Iowa type II)
Lineage
Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Cryptosporidiidae; Cryptosporidium
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Genomic context

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Location:
chromosome: 7
Exon count:
1
Sequence:
Chromosome: 7; NC_006986.1 (507646..508239, complement)

Chromosome 7 - NC_006986.1Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleo protein Neighboring gene Hch1p like mystery proteins. Neighboring gene hypothetical protein Neighboring gene mitochondrial processing peptidase, insulinase like metalloprotease

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_006986.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete genome sequence of the apicomplexan, Cryptosporidium parvum. Abrahamsen MS, et al. Science, 2004 Apr 16. PMID 15044751
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of retromer complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
vacuolar protein sorting 29
XP_628383.1
  • derived version of the calcineurin phosphoesterase fold

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006986.1 Reference assembly

    Range
    507646..508239 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_628381.1 → XP_628383.1  vacuolar protein sorting 29 [Cryptosporidium parvum Iowa II]

    See identical proteins and their annotated locations for XP_628383.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7S7LEK3, Q5CYJ7
    Conserved Domains (1) summary
    cd07394
    Location:9 → 195
    MPP_Vps29; Homo sapiens Vps29 and related proteins, metallophosphatase domain
Nucleotide Protein
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Gene LinkOut

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