zgc:77151 zgc:77151 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:77151provided by ZNC
Official Full Name: zgc:77151provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-9097
See related: Ensembl:ENSDARG00000054307 AllianceGenome:ZFIN:ZDB-GENE-030131-9097
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fa99c05; wu:fa99c05
Summary: Predicted to enable transcription cis-regulatory region binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ARID5B (AT-rich interaction domain 5B). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 21

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	21	NC_007132.7 (36985209..37027252, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	21	NC_007132.6 (37300022..37342065, complement)

Chromosome 21 - NC_007132.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fa99c05 (e-PCR), detects polymorphism
- UniSTS:188949

fi76c07.x1 (e-PCR)
- UniSTS:198004

fd08e06.y1 (e-PCR)
- UniSTS:195046

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables transcription cis-regulatory region binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: uncharacterized protein LOC337153

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_205565.2 → NP_991128.2 uncharacterized protein LOC337153

Status: VALIDATED

Source sequence(s)

BX649250, BX914201

UniProtKB/TrEMBL

A0A8M1PEQ6, F1QZ36

Related

ENSDARP00000070955.4, ENSDART00000076483.4

Conserved Domains (1) summary

smart00501
Location:286 → 378

BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain