c1galt1lb core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: c1galt1lbprovided by ZNC
Official Full Name: core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-9075
See related: Ensembl:ENSDARG00000055561 AllianceGenome:ZFIN:ZDB-GENE-030131-9075
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: c1galt1; fa98f05; c1galt1b; zgc:66485; wu:fa98f05
Summary: Predicted to enable glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. Predicted to be involved in angiogenesis and kidney development. Predicted to be located in membrane. Is expressed in EVL; notochord; and periderm. Orthologous to human C1GALT1 (core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 6

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	6	NC_007117.7 (39190708..39198912, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	6	NC_007117.6 (39193172..39201376, complement)

Chromosome 6 - NC_007117.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

fa98f05 (e-PCR)
- UniSTS:188942

fb11a12.x1 (e-PCR)
- UniSTS:202826

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity	IBA Inferred from Biological aspect of Ancestor more info
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity	IEA Inferred from Electronic Annotation more info
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity	ISS Inferred from Sequence or Structural Similarity more info
enables glycosyltransferase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables nucleotide binding	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in angiogenesis	ISS Inferred from Sequence or Structural Similarity more info
involved_in kidney development	ISS Inferred from Sequence or Structural Similarity more info
involved_in protein glycosylation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in membrane	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B

Names: C1GalT1-B; core 1 O-glycan T-synthase B; core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase 1-B; core 1 beta1,3-galactosyltransferase 1-B; core 1 beta3-Gal-T-B; core 1 beta3-Gal-T1-B; core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1; core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1b; core1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase 1-B

NP_956345.1

EC 2.4.1.122

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200051.1 → NP_956345.1 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B

See identical proteins and their annotated locations for NP_956345.1

Status: PROVISIONAL

Source sequence(s)

BC054714

UniProtKB/Swiss-Prot

Q7SYI5

Related

ENSDARP00000072404.3, ENSDART00000077938.5

Conserved Domains (1) summary

cl21608
Location:107 → 274

Galactosyl_T; Galactosyltransferase