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h3f3c H3 histone, family 3C [ Danio rerio (zebrafish) ]

Gene ID: 336231, updated on 2-Nov-2024

Summary

Official Symbol
h3f3cprovided by ZNC
Official Full Name
H3 histone, family 3Cprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8175
See related
Ensembl:ENSDARG00000033009 AllianceGenome:ZFIN:ZDB-GENE-030131-8175
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj58b09; zgc:64222; wu:fj58b09
Summary
Orthologous to human H3-3A (H3.3 histone A) and H3-3B (H3.3 histone B). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See h3f3c in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (36945262..36949476, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (36345109..36349323, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene kaptin (actin binding protein) Neighboring gene cone-rod homeobox Neighboring gene uncharacterized LOC137495609 Neighboring gene gap junction protein delta 1a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200003.1NP_956297.1  H3 histone, family 3C

    See identical proteins and their annotated locations for NP_956297.1

    Status: PROVISIONAL

    Source sequence(s)
    BC057444
    UniProtKB/Swiss-Prot
    A5PL96, Q6PI20, Q7ZV67
    UniProtKB/TrEMBL
    B2GSF5
    Related
    ENSDARP00000047268.5, ENSDART00000047269.7
    Conserved Domains (1) summary
    PTZ00018
    Location:1136
    PTZ00018; histone H3; Provisional

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    36945262..36949476 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394595.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    194513..198749 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)