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Tceal5 transcription elongation factor A (SII)-like 5 [ Mus musculus (house mouse) ]

Gene ID: 331532, updated on 6-Oct-2024

Summary

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Official Symbol
Tceal5provided by MGI
Official Full Name
transcription elongation factor A (SII)-like 5provided by MGI
Primary source
MGI:MGI:3036236
See related
Ensembl:ENSMUSG00000054034 AllianceGenome:MGI:3036236
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
6430401A05Rik
Summary
Predicted to enable WW domain binding activity. Predicted to be active in nucleus. Orthologous to human TCEAL5 (transcription elongation factor A like 5). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in frontal lobe adult (RPKM 53.5), cortex adult (RPKM 43.7) and 10 other tissues See more
Orthologs
human all
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Genomic context

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See Tceal5 in Genome Data Viewer
Location:
X F1; X 57.4 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (135101697..135104633, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (136200948..136203884, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene microRNA 6383 Neighboring gene predicted gene, 41901 Neighboring gene nuclear encoded tRNA lysine 19 (anticodon CTT) Neighboring gene STARR-seq mESC enhancer starr_47976 Neighboring gene predicted gene, 51612 Neighboring gene brain expressed X-linked 1 Neighboring gene transcription elongation factor A (SII)-like 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Tceal5 and Tceal7 Function in C2C12 Myogenic Differentiation via Exosomes in Fetal Bovine Serum. Sawada A, et al. Int J Mol Sci, 2022 Feb 12. PMID 35216152, Free PMC Article
  2. Gene Expression in Mouse Thyrotrope Adenoma: Transcription Elongation Factor Stimulates Proliferation. Gergics P, et al. Endocrinology, 2016 Sep. PMID 27580811, Free PMC Article
  3. SDS3 interacts with ARNT in an AhR ligand-specific manner regulating expression of cKrox and S100A4 in CD4+CD8+ DPK thymocytes differentiation. Lee DM, et al. Environ Toxicol Pharmacol, 2012 Nov. PMID 22981438
  4. Characterization of an eutherian gene cluster generated after transposon domestication identifies Bex3 as relevant for advanced neurological functions. Navas-Pérez E, et al. Genome Biol, 2020 Oct 26. PMID 33100228, Free PMC Article
  5. Neuron-specific protein network mapping of autism risk genes identifies shared biological mechanisms and disease-relevant pathologies. Murtaza N, et al. Cell Rep, 2022 Nov 22. PMID 36417873

See all (21) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Tceal5 and Tceal7 Function in C2C12 Myogenic Differentiation via Exosomes in Fetal Bovine Serum.
    Title: Tceal5 and Tceal7 Function in C2C12 Myogenic Differentiation via Exosomes in Fetal Bovine Serum.
  2. sufficient to increase the growth rate of pituitary progenitors, suggesting a role as a proto-oncogene
    Title: Gene Expression in Mouse Thyrotrope Adenoma: Transcription Elongation Factor Stimulates Proliferation.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transcription elongation factor A protein-like 5
Names
TCEA-like protein 5
transcription elongation factor S-II protein-like 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001365117.1 → NP_001352046.1  transcription elongation factor A protein-like 5

    Status: VALIDATED

    Source sequence(s)
    AK032140, BE991033, BY136503
    Consensus CDS
    CCDS30416.1
    UniProtKB/Swiss-Prot
    Q497R6, Q8CCT4
    UniProtKB/TrEMBL
    Q14C38
    Conserved Domains (1) summary
    pfam04538
    Location:55 → 170
    BEX; Brain expressed X-linked like family

  2. NM_001365118.1 → NP_001352047.1  transcription elongation factor A protein-like 5

    Status: VALIDATED

    Source sequence(s)
    AL772180
    Consensus CDS
    CCDS30416.1
    UniProtKB/Swiss-Prot
    Q497R6, Q8CCT4
    UniProtKB/TrEMBL
    Q14C38
    Conserved Domains (1) summary
    pfam04538
    Location:55 → 170
    BEX; Brain expressed X-linked like family

  3. NM_177919.3 → NP_808587.1  transcription elongation factor A protein-like 5

    See identical proteins and their annotated locations for NP_808587.1

    Status: VALIDATED

    Source sequence(s)
    AK032140, BE991033, BY245586
    Consensus CDS
    CCDS30416.1
    UniProtKB/Swiss-Prot
    Q497R6, Q8CCT4
    UniProtKB/TrEMBL
    Q14C38
    Related
    ENSMUSP00000065397.5, ENSMUST00000066819.11
    Conserved Domains (1) summary
    pfam04538
    Location:55 → 170
    BEX; Brain expressed X-linked like family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    135101697..135104633 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8CCT4.1 GenPept UniProtKB/Swiss-Prot:Q8CCT4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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