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Gal3st4 galactose-3-O-sulfotransferase 4 [ Mus musculus (house mouse) ]

Gene ID: 330217, updated on 17-Aug-2024

Summary

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Official Symbol
Gal3st4provided by MGI
Official Full Name
galactose-3-O-sulfotransferase 4provided by MGI
Primary source
MGI:MGI:1916254
See related
Ensembl:ENSMUSG00000075593 AllianceGenome:MGI:1916254
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1500031A01Rik
Summary
Predicted to enable galactose 3-O-sulfotransferase activity. Predicted to act upstream of or within glycoprotein biosynthetic process. Predicted to be located in membrane. Orthologous to human GAL3ST4 (galactose-3-O-sulfotransferase 4). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in genital fat pad adult (RPKM 9.2), CNS E11.5 (RPKM 1.4) and 14 other tissues See more
Orthologs
human all
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Genomic context

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See Gal3st4 in Genome Data Viewer
Location:
5 G2; 5 77.0 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (138263180..138271261, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (138264918..138273057, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E532 Neighboring gene RIKEN cDNA 6330418K02 gene Neighboring gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 Neighboring gene STARR-positive B cell enhancer ABC_E4800 Neighboring gene trafficking protein particle complex 14 Neighboring gene STARR-positive B cell enhancer ABC_E3630 Neighboring gene STAG3 cohesin complex component Neighboring gene glypican 2 cerebroglycan Neighboring gene poliovirus receptor related immunoglobulin domain containing Neighboring gene poliovirus receptor related immunoglobulin domain containing, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Gpr126/Adgrg6 deletion in cartilage models idiopathic scoliosis and pectus excavatum in mice. Karner CM, et al. Hum Mol Genet, 2015 Aug 1. PMID 25954032, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables galactose 3-O-sulfotransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables galactose 3-O-sulfotransferase activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within glycoprotein biosynthetic process ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
galactose-3-O-sulfotransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347507.1 → NP_001334436.1  galactose-3-O-sulfotransferase 4 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC159257
    Consensus CDS
    CCDS84982.1
    UniProtKB/TrEMBL
    E9Q7N6, Q3UTX9
    Related
    ENSMUSP00000125084.2, ENSMUST00000161647.8

  2. NM_001361283.1 → NP_001348212.1  galactose-3-O-sulfotransferase 4 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AK138993, AK162468, BY282992, BY619135, CX243736
    Consensus CDS
    CCDS19798.1
    UniProtKB/TrEMBL
    Q3UTX9, Q3V1B8
    Related
    ENSMUSP00000124841.2, ENSMUST00000161279.8
    Conserved Domains (1) summary
    cl22970
    Location:1 → 463
    Sulfotransfer_2; Sulfotransferase family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    138263180..138271261 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006504583.5 → XP_006504646.1  galactose-3-O-sulfotransferase 4 isoform X3

    UniProtKB/TrEMBL
    Q3TRU1
    Conserved Domains (1) summary
    cl22970
    Location:1 → 316
    Sulfotransfer_2; Sulfotransferase family

  2. XM_017320935.3 → XP_017176424.1  galactose-3-O-sulfotransferase 4 isoform X1

    UniProtKB/TrEMBL
    Q3UTX9, Q3V1B8
    Conserved Domains (1) summary
    cl22970
    Location:1 → 463
    Sulfotransfer_2; Sulfotransferase family

  3. XM_036165230.1 → XP_036021123.1  galactose-3-O-sulfotransferase 4 isoform X2

    UniProtKB/TrEMBL
    Q3UTX9
    Conserved Domains (1) summary
    cl22970
    Location:4 → 454
    Sulfotransfer_2; Sulfotransferase family

  4. XM_036165229.1 → XP_036021122.1  galactose-3-O-sulfotransferase 4 isoform X1

    UniProtKB/TrEMBL
    Q3UTX9, Q3V1B8
    Related
    ENSMUSP00000098099.2, ENSMUST00000100530.8
    Conserved Domains (1) summary
    cl22970
    Location:1 → 463
    Sulfotransfer_2; Sulfotransferase family

  5. XM_006504582.4 → XP_006504645.1  galactose-3-O-sulfotransferase 4 isoform X2

    UniProtKB/TrEMBL
    Q3UTX9
    Conserved Domains (1) summary
    cl22970
    Location:4 → 454
    Sulfotransfer_2; Sulfotransferase family

  6. XM_006504579.5 → XP_006504642.1  galactose-3-O-sulfotransferase 4 isoform X1

    See identical proteins and their annotated locations for XP_006504642.1

    UniProtKB/TrEMBL
    Q3UTX9, Q3V1B8
    Conserved Domains (1) summary
    cl22970
    Location:1 → 463
    Sulfotransfer_2; Sulfotransferase family

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001033416.2: Suppressed sequence

    Description
    NM_001033416.2: This RefSeq has been removed because currently there is insufficient support for the transcript.
Nucleotide Protein Strain
Heading Accession and Version

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