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Gm5108 predicted gene 5108 [ Mus musculus (house mouse) ]

Gene ID: 330097, updated on 22-Oct-2024

Summary

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Official Symbol
Gm5108provided by MGI
Official Full Name
predicted gene 5108provided by MGI
Primary source
MGI:MGI:3645064
See related
Ensembl:ENSMUSG00000087261 AllianceGenome:MGI:3645064
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG330097
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gm5108 in Genome Data Viewer
Location:
5 C3.1; 5 36.46 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (68099012..68134413)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (67941669..67977070)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene ATPase phospholipid transporting 8A1 Neighboring gene STARR-positive B cell enhancer ABC_E1052 Neighboring gene predicted gene, 52816 Neighboring gene RIKEN cDNA 4930425K10 gene Neighboring gene predicted gene 15477 Neighboring gene glutaredoxin, cysteine rich 1 Neighboring gene STARR-seq mESC enhancer starr_13325 Neighboring gene STARR-seq mESC enhancer starr_13326 Neighboring gene STARR-seq mESC enhancer starr_13327 Neighboring gene STARR-seq mESC enhancer starr_13328 Neighboring gene predicted gene, 57742

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC330097

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001256184.1 → NP_001243113.1  uncharacterized protein LOC330097

    Status: VALIDATED

    Source sequence(s)
    AK076825
    Consensus CDS
    CCDS57348.1
    UniProtKB/TrEMBL
    J3QP01
    Related
    ENSMUST00000202730.5

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    68099012..68134413
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_207257.1: Suppressed sequence

    Description
    NM_207257.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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