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Aknad1 AKNA domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 329738, updated on 2-Nov-2024

Summary

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Official Symbol
Aknad1provided by MGI
Official Full Name
AKNA domain containing 1provided by MGI
Primary source
MGI:MGI:3584453
See related
Ensembl:ENSMUSG00000049565 AllianceGenome:MGI:3584453
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4921525H12Rik
Summary
Orthologous to human AKNAD1 (AKNA domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 2.1), limb E14.5 (RPKM 0.6) and 3 other tissues See more
Orthologs
human all
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Genomic context

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See Aknad1 in Genome Data Viewer
Location:
3 F3; 3 47.64 cM
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (108646876..108689625)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (108739559..108782309)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene WD repeat domain 47 Neighboring gene 40S ribosomal protein S23 pseudogene Neighboring gene chloride channel CLIC-like 1 Neighboring gene G-protein signalling modulator 2 (AGS3-like, C. elegans) Neighboring gene STARR-positive B cell enhancer ABC_E4575 Neighboring gene syntaxin binding protein 3 Neighboring gene STARR-positive B cell enhancer mm9_chr3:108642483-108642783 Neighboring gene STARR-positive B cell enhancer mm9_chr3:108643371-108643672 Neighboring gene fibronectin type III domain containing 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Voltage-dependent conformational changes of Kv1.3 channels activate cell proliferation. Cidad P, et al. J Cell Physiol, 2021 Jun. PMID 33230847
  2. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
protein AKNAD1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177859.3 → NP_808527.2  protein AKNAD1

    See identical proteins and their annotated locations for NP_808527.2

    Status: VALIDATED

    Source sequence(s)
    AK135678, AK164420, AL671917
    Consensus CDS
    CCDS51049.1
    UniProtKB/TrEMBL
    E9Q8N6
    Related
    ENSMUSP00000121755.3, ENSMUST00000133931.9
    Conserved Domains (1) summary
    pfam12443
    Location:322 → 414
    AKNA; AT-hook-containing transcription factor

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    108646876..108689625
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011240149.3 → XP_011238451.1  protein AKNAD1 isoform X1

    See identical proteins and their annotated locations for XP_011238451.1

    UniProtKB/TrEMBL
    E9Q8N6
    Conserved Domains (1) summary
    pfam12443
    Location:322 → 414
    AKNA; AT-hook-containing transcription factor

  2. XM_011240150.4 → XP_011238452.1  protein AKNAD1 isoform X2

    Conserved Domains (1) summary
    pfam12443
    Location:322 → 414
    AKNA; AT-hook-containing transcription factor

  3. XM_006501611.5 → XP_006501674.1  protein AKNAD1 isoform X3

    Conserved Domains (1) summary
    pfam12443
    Location:322 → 411
    AKNA; AT-hook-containing transcription factor

  4. XM_011240151.3 → XP_011238453.1  protein AKNAD1 isoform X4

    See identical proteins and their annotated locations for XP_011238453.1

    UniProtKB/TrEMBL
    Q8BI23
    Related
    ENSMUSP00000125068.2, ENSMUST00000123556.8
    Conserved Domains (1) summary
    pfam12443
    Location:322 → 409
    AKNA; AT-hook-containing transcription factor

  5. XM_006501608.5 → XP_006501671.1  protein AKNAD1 isoform X1

    See identical proteins and their annotated locations for XP_006501671.1

    UniProtKB/TrEMBL
    E9Q8N6
    Conserved Domains (1) summary
    pfam12443
    Location:322 → 414
    AKNA; AT-hook-containing transcription factor

  6. XM_006501609.4 → XP_006501672.1  protein AKNAD1 isoform X1

    See identical proteins and their annotated locations for XP_006501672.1

    UniProtKB/TrEMBL
    E9Q8N6
    Conserved Domains (1) summary
    pfam12443
    Location:322 → 414
    AKNA; AT-hook-containing transcription factor
Nucleotide Protein Strain
Heading Accession and Version

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