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Cfap77 cilia and flagella associated protein 77 [ Mus musculus (house mouse) ]

Gene ID: 329375, updated on 17-Aug-2024

Summary

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Official Symbol
Cfap77provided by MGI
Official Full Name
cilia and flagella associated protein 77provided by MGI
Primary source
MGI:MGI:2685669
See related
Ensembl:ENSMUSG00000079502 AllianceGenome:MGI:2685669
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm823; 1700101E01Rik
Summary
Orthologous to human CFAP77 (cilia and flagella associated protein 77). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 7.0), ovary adult (RPKM 1.6) and 3 other tissues See more
Orthologs
human all
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Genomic context

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Location:
2 A3; 2 19.38 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (28845493..28945078, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (28955481..29055066, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene BarH like homeobox 1 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E4422 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:28916086-28916195 Neighboring gene STARR-seq mESC enhancer starr_04036 Neighboring gene STARR-seq mESC enhancer starr_04037 Neighboring gene transcription termination factor, RNA polymerase I Neighboring gene ring finger and WD repeat domain 2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in axonemal B tubule inner sheath IDA
Inferred from Direct Assay
more info
 PubMed 
located_in axonemal microtubule ISO
Inferred from Sequence Orthology
more info
  
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
cilia- and flagella-associated protein 77

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001166705.1 → NP_001160177.1  cilia- and flagella-associated protein 77

    See identical proteins and their annotated locations for NP_001160177.1

    Status: VALIDATED

    Source sequence(s)
    BB647135, BC147761
    Consensus CDS
    CCDS50551.1
    UniProtKB/TrEMBL
    A0A087WRI3, B2RWG1
    Related
    ENSMUSP00000125742.2, ENSMUST00000157048.4
    Conserved Domains (1) summary
    pfam14825
    Location:56 → 203
    DUF4483; Domain of unknown function (DUF4483)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    28845493..28945078 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001085514.2: Suppressed sequence

    Description
    NM_001085514.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

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