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Gm5087 predicted gene 5087 [ Mus musculus (house mouse) ]

Gene ID: 328354, updated on 17-Aug-2024

Summary

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Official Symbol
Gm5087provided by MGI
Official Full Name
predicted gene 5087provided by MGI
Primary source
MGI:MGI:3643653
See related
Ensembl:ENSMUSG00000051729 AllianceGenome:MGI:3643653
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C630025C03
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gm5087 in Genome Data Viewer
Location:
14 A1; 14 6.86 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (9185125..9312375)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (13157388..13284638, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene sentan, cilia apical structure protein Neighboring gene synaptoporin Neighboring gene STARR-seq mESC enhancer starr_35970 Neighboring gene STARR-seq mESC enhancer starr_35969 Neighboring gene STARR-seq mESC enhancer starr_35968 Neighboring gene STARR-seq mESC enhancer starr_35966 Neighboring gene STARR-seq mESC enhancer starr_35965 Neighboring gene STARR-seq mESC enhancer starr_35964 Neighboring gene STARR-seq mESC enhancer starr_35963 Neighboring gene STARR-seq mESC enhancer starr_35962 Neighboring gene STARR-seq mESC enhancer starr_35960 Neighboring gene ubiquinol-cytochrome c reductase binding protein pseudogene Neighboring gene Ca2+-dependent secretion activator Neighboring gene STARR-seq mESC enhancer starr_35958 Neighboring gene ribosomal protein S7 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_121588.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK083193
    Related
    ENSMUST00000060526.11

  2. NR_121589.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains two additional internal exons, and lacks two 3' exons but contains an alternate 3' terminal exon, compared to variant 1.
    Source sequence(s)
    AC166106, AK081144, AK083193
    Related
    ENSMUST00000140967.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    9185125..9312375
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_177813.3: Suppressed sequence

    Description
    NM_177813.3: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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