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NR2F1 nuclear receptor subfamily 2 group F member 1 [ Bos taurus (domestic cattle) ]

Gene ID: 327684, updated on 4-Oct-2024

Summary

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Official Symbol
NR2F1provided by VGNC
Official Full Name
nuclear receptor subfamily 2 group F member 1provided by VGNC
Primary source
VGNC:VGNC:32240
See related
BGD:BT10561; Ensembl:ENSBTAG00000017599
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
COUP-TF; COUP-TFI
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See NR2F1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (93052305..93062131)

Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132345793 Neighboring gene uncharacterized LOC104968982 Neighboring gene uncharacterized LOC100848699 Neighboring gene family with sequence similarity 172 member A Neighboring gene multiple C2 and transmembrane domain containing 1 Neighboring gene SMC5-SMC6 complex localization factor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chicken ovalbumin upstream promoter-transcription factor is a negative regulator of steroidogenesis in bovine adrenal glomerulosa cells. Buholzer CF, et al. Mol Endocrinol, 2005 Jan. PMID 15375188
  2. Chicken ovalbumin upstream promoter-transcription factor interacts with estrogen receptor, binds to estrogen response elements and half-sites, and inhibits estrogen-induced gene expression. Klinge CM, et al. J Biol Chem, 1997 Dec 12. PMID 9395481
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
COUP transcription factor 1
Names
COUP transcription factor I
COUP-TF I
COUP-TF1
chicken ovalbumin upstream promoter-transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175804.2 → NP_786998.1  COUP transcription factor 1

    See identical proteins and their annotated locations for NP_786998.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ249440
    UniProtKB/Swiss-Prot
    Q9TTR8
    UniProtKB/TrEMBL
    A0A3Q1LM85
    Related
    ENSBTAP00000023401.6, ENSBTAT00000023401.6
    Conserved Domains (2) summary
    cd06948
    Location:185 → 420
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
    cd06958
    Location:87 → 159
    NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    93052305..93062131
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9TTR8.1 GenPept UniProtKB/Swiss-Prot:Q9TTR8

Gene LinkOut

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