rsf1b.1 remodeling and spacing factor 1b, tandem duplicate 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rsf1b.1provided by ZNC
Official Full Name: remodeling and spacing factor 1b, tandem duplicate 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-5829
See related: Ensembl:ENSDARG00000068640 AllianceGenome:ZFIN:ZDB-GENE-030131-5829
Gene type: protein coding
RefSeq status: MODEL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fi20e01; wu:fi20e01; si:dkey-21n12.1
Summary: Predicted to enable histone binding activity. Predicted to be involved in negative regulation of DNA-templated transcription. Predicted to act upstream of or within regulation of DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of RSF complex. Orthologous to human RSF1 (remodeling and spacing factor 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 10

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	10	NC_007121.7 (36611103..36633927, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	10	NC_007121.6 (36667343..36690175, complement)

Chromosome 10 - NC_007121.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

fi20e01.x1 (e-PCR)
- UniSTS:196998

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables histone binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in negative regulation of DNA-templated transcription	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of RSF complex	IBA Inferred from Biological aspect of Ancestor more info
part_of RSF complex	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: remodeling and spacing factor 1; uncharacterized protein LOC327618

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007121.7 Reference GRCz11 Primary Assembly

Range

36611103..36633927 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_068223991.1 → XP_068080092.1 remodeling and spacing factor 1 isoform X4
XM_017358080.3 → XP_017213569.1 remodeling and spacing factor 1 isoform X3

UniProtKB/TrEMBL

A0A8M6Z8X0

Conserved Domains (5) summary

cd15543
Location:1370 → 1415

PHD_RSF1; PHD finger found in Remodeling and spacing factor 1 (Rsf-1)

pfam02791
Location:23 → 67

DDT; DDT domain

pfam05087
Location:226 → 322

Rota_VP2; Rotavirus VP2 protein

pfam15613
Location:139 → 171

WHIM2; WSTF, HB1, Itc1p, MBD9 motif 2

cl02608
Location:1392 → 1445

BAH; BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...
XM_017358079.3 → XP_017213568.1 remodeling and spacing factor 1 isoform X2

UniProtKB/TrEMBL

A0A8M6Z326, F1Q6Y6

Related

ENSDARP00000071629.3, ENSDART00000077161.4

Conserved Domains (5) summary

cd15543
Location:1371 → 1416

PHD_RSF1; PHD finger found in Remodeling and spacing factor 1 (Rsf-1)

pfam02791
Location:23 → 67

DDT; DDT domain

pfam05087
Location:226 → 322

Rota_VP2; Rotavirus VP2 protein

pfam15613
Location:139 → 171

WHIM2; WSTF, HB1, Itc1p, MBD9 motif 2

cl02608
Location:1393 → 1446

BAH; BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...
XM_017358078.3 → XP_017213567.1 remodeling and spacing factor 1 isoform X1

UniProtKB/TrEMBL

A0A8M6Z1G1

Conserved Domains (5) summary

cd15543
Location:1371 → 1416

PHD_RSF1; PHD finger found in Remodeling and spacing factor 1 (Rsf-1)

pfam02791
Location:23 → 67

DDT; DDT domain

pfam05087
Location:226 → 322

Rota_VP2; Rotavirus VP2 protein

pfam15613
Location:139 → 171

WHIM2; WSTF, HB1, Itc1p, MBD9 motif 2

cl02608
Location:1393 → 1446

BAH; BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...