tgds TDP-glucose 4,6-dehydratase [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: tgdsprovided by ZNC
Official Full Name: TDP-glucose 4,6-dehydrataseprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-5718
See related: AllianceGenome:ZFIN:ZDB-GENE-030131-5718
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:56498; wu:fi14g09
Summary: Predicted to enable dTDP-glucose 4,6-dehydratase activity. Predicted to act upstream of or within nucleotide-sugar metabolic process. Orthologous to human TGDS (TDP-glucose 4,6-dehydratase). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

Location:: chromosome: Un

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	Unplaced Scaffold	NW_008805462.1 (334..906, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	Unplaced Scaffold	NW_008805462.1 (303..966, complement)

NW_008805462.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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General protein information

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Preferred Names: dTDP-D-glucose 4,6-dehydratase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_199817.1 → NP_956111.1 dTDP-D-glucose 4,6-dehydratase

See identical proteins and their annotated locations for NP_956111.1

Status: PROVISIONAL

Source sequence(s)

BC049462

UniProtKB/TrEMBL

Q7ZWD9

Conserved Domains (2) summary

cd05246
Location:7 → 265

dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

pfam01370
Location:9 → 247

Epimerase; NAD dependent epimerase/dehydratase family