snrnp48 small nuclear ribonucleoprotein 48 (U11/U12) [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: snrnp48provided by ZNC
Official Full Name: small nuclear ribonucleoprotein 48 (U11/U12)provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-4482
See related: Ensembl:ENSDARG00000039989 AllianceGenome:ZFIN:ZDB-GENE-030131-4482
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fd10a06; wu:fd10a06
Summary: Predicted to enable metal ion binding activity. Predicted to be part of U12-type spliceosomal complex. Predicted to be active in cytosol and nucleoplasm. Orthologous to human SNRNP48 (small nuclear ribonucleoprotein U11/U12 subunit 48). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 16

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	16	NC_007127.7 (36974523..36979598, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	16	NC_007127.6 (37020639..37025731, complement)

Chromosome 16 - NC_007127.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of U12-type spliceosomal complex	IBA Inferred from Biological aspect of Ancestor more info
is_active_in cytosol	IBA Inferred from Biological aspect of Ancestor more info
is_active_in nucleoplasm	IBA Inferred from Biological aspect of Ancestor more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: U11/U12 small nuclear ribonucleoprotein 48 kDa protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001115142.1 → NP_001108614.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein

Status: PROVISIONAL

Source sequence(s)

BX005341

UniProtKB/TrEMBL

A0A0R4IMG9, A0A8M1NI61

Related

ENSDARP00000136650.1, ENSDART00000168443.2

Conserved Domains (1) summary

pfam05253
Location:53 → 74

zf-U11-48K; U11-48K-like CHHC zinc finger