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iqce IQ motif containing E [ Danio rerio (zebrafish) ]

Gene ID: 323898, updated on 12-Sep-2024

Summary

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Official Symbol
iqceprovided by ZNC
Official Full Name
IQ motif containing Eprovided by ZNC
Primary source
ZFIN:ZDB-GENE-090312-217
See related
Ensembl:ENSDARG00000089930 AllianceGenome:ZFIN:ZDB-GENE-090312-217
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-21j8.2
Summary
Is expressed in hindbrain; midbrain; and pronephric duct. Orthologous to human IQCE (IQ motif containing E). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See iqce in Genome Data Viewer
Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (11854710..11878845, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (11167910..11192063, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene zmp:0000001069 Neighboring gene tweety family member 3b Neighboring gene uncharacterized LOC137495029 Neighboring gene sorting nexin 8b Neighboring gene G protein-coupled receptor kinase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Novel IQCE variations confirm its role in postaxial polydactyly and cause ciliary defect phenotype in zebrafish. Estrada-Cuzcano A, et al. Hum Mutat, 2020 Jan. PMID 31549751
  2. Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. Sreenivasan R, et al. PLoS One, 2008 Mar 12. PMID 18335061, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
IQ domain-containing protein E

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001287204.1 → NP_001274133.1  IQ domain-containing protein E

    Status: VALIDATED

    Source sequence(s)
    BX569778
    UniProtKB/TrEMBL
    A0A0R4IP00, A0A8M1P576
    Related
    ENSDARP00000137335.1, ENSDART00000163971.2
    Conserved Domains (1) summary
    TIGR02168
    Location:212 → 481
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    11854710..11878845 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002660380.6 → XP_002660426.1  IQ domain-containing protein E isoform X1

    UniProtKB/TrEMBL
    A0A8M1RLK2, E7F5G1
    Related
    ENSDARP00000111024.2, ENSDART00000123431.3
    Conserved Domains (1) summary
    TIGR02168
    Location:213 → 482
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
Nucleotide Protein Strain
Heading Accession and Version

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