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speB agmatinase [ Thermococcus kodakarensis KOD1 ]

Gene ID: 3234601, updated on 22-Oct-2024

Summary

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Gene symbol
speB
Gene description
agmatinase
Locus tag
TK_RS04350
Gene type
protein coding
Organism
Thermococcus kodakarensis KOD1 (strain: KOD1, type-material: type strain of Thermococcus kodakarensis)
Lineage
Archaea; Methanobacteriati; Methanobacteriota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus
Old locus tag
TK0882
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Genomic context

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Sequence:
NC_006624.1 (768484..769350)

NC_006624.1Genomic Context describing neighboring genes Neighboring gene SLC13 family permease Neighboring gene universal stress protein Neighboring gene HPP family protein Neighboring gene cation:proton antiporter Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_006624.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual biosynthesis pathway for longer-chain polyamines in the hyperthermophilic archaeon Thermococcus kodakarensis. Morimoto N, et al. J Bacteriol, 2010 Oct. PMID 20675472, Free PMC Article
  2. Phylogeny of related functions: the case of polyamine biosynthetic enzymes. Sekowska A, et al. Microbiology (Reading), 2000 Aug. PMID 10931887
  3. Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes. Fukui T, et al. Genome Res, 2005 Mar. PMID 15710748, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General protein information

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Preferred Names
agmatinase
WP_011249833.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006624.1 Reference assembly

    Range
    768484..769350
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_011249833.1 agmatinase [Thermococcus kodakarensis]

    See identical proteins and their annotated locations for WP_011249833.1

    UniProtKB/Swiss-Prot
    Q5JI38
    Conserved Domains (1) summary
    cd11593
    Location:24 → 277
    Agmatinase-like_2; Agmatinase and related proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5JI38.1