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CG11085 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 32213, updated on 2-Nov-2024

Summary

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Official Symbol
CG11085provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0030408
Locus tag
Dmel_CG11085
See related
AllianceGenome:FB:FBgn0030408
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG11085
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in animal organ development and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in organism. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

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See CG11085 in Genome Data Viewer
Location:
11B4-11B4; 1-39 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (12616316..12621216)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (12510349..12515249)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR45621 Neighboring gene Folylpolyglutamate synthase 1 Neighboring gene long non-coding RNA:CR44568 Neighboring gene uncharacterized protein Neighboring gene Apoptosis and caspase activation inhibitor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dynamic neurotransmitter specific transcription factor expression profiles during Drosophila development. Estacio-Gómez A, et al. Biol Open, 2020 Jun 3. PMID 32493733, Free PMC Article
  2. Integrating motif, DNA accessibility and gene expression data to build regulatory maps in an organism. Blatti C, et al. Nucleic Acids Res, 2015 Apr 30. PMID 25791631, Free PMC Article
  3. Homeodomain proteins: an update. Bürglin TR, et al. Chromosoma, 2016 Jun. PMID 26464018, Free PMC Article
  4. Rapid and efficient cDNA library screening by self-ligation of inverse PCR products (SLIP). Hoskins RA, et al. Nucleic Acids Res, 2005 Dec 2. PMID 16326860, Free PMC Article
  5. Conservation of transcription factor binding specificities across 600 million years of bilateria evolution. Nitta KR, et al. Elife, 2015 Mar 17. PMID 25779349, Free PMC Article

See all (25) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in animal organ development IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG11085-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    12616316..12621216
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_132587.4 → NP_572815.3  uncharacterized protein Dmel_CG11085 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_572815.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q4V6V5, Q9VYL0
    Conserved Domains (1) summary
    pfam00046
    Location:163 → 216
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VYL0 Q9VYL0

Gene LinkOut

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