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Ifitm10 interferon induced transmembrane protein 10 [ Mus musculus (house mouse) ]

Gene ID: 320802, updated on 2-Nov-2024

Summary

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Official Symbol
Ifitm10provided by MGI
Official Full Name
interferon induced transmembrane protein 10provided by MGI
Primary source
MGI:MGI:2444776
See related
Ensembl:ENSMUSG00000045777 AllianceGenome:MGI:2444776
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
DSPA3; 6330512M04Rik
Summary
Predicted to be active in plasma membrane. Orthologous to human IFITM10 (interferon induced transmembrane protein 10). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in cerebellum adult (RPKM 9.8), lung adult (RPKM 4.5) and 8 other tissues See more
Orthologs
human all
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Genomic context

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See Ifitm10 in Genome Data Viewer
Location:
7 F5; 7 87.9 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (141879572..141927526, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (142325835..142373779, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene keratin associated protein 5-4 Neighboring gene predicted gene 5054 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:149508605-149508858 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:149509431-149509643 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:149539783-149540069 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:149567080-149567427 Neighboring gene STARR-seq mESC enhancer starr_20506 Neighboring gene cathepsin D Neighboring gene predicted gene, 26143

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The dispanins: a novel gene family of ancient origin that contains 14 human members. Sällman Almén M, et al. PLoS One, 2012. PMID 22363774, Free PMC Article
  2. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
interferon-induced transmembrane protein 10
Names
CD225 family protein FLJ76511 homolog
dispanin subfamily A member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347541.4 → NP_001334470.2  interferon-induced transmembrane protein 10 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC034099
    Consensus CDS
    CCDS85468.1
    Related
    ENSMUSP00000101608.2, ENSMUST00000105988.2

  2. NM_001347542.2 → NP_001334471.1  interferon-induced transmembrane protein 10 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC034099
    Consensus CDS
    CCDS85467.1
    UniProtKB/Swiss-Prot
    Q8BR26
    Related
    ENSMUSP00000081450.6, ENSMUST00000084412.6
    Conserved Domains (1) summary
    pfam04505
    Location:53 → 119
    CD225; Interferon-induced transmembrane protein

  3. NM_001419315.1 → NP_001406244.1  interferon-induced transmembrane protein 10 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC034099

  4. NM_001419316.1 → NP_001406245.1  interferon-induced transmembrane protein 10 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC034099

  5. NM_001419317.1 → NP_001406246.1  interferon-induced transmembrane protein 10 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC034099

  6. NM_001419318.1 → NP_001406247.1  interferon-induced transmembrane protein 10 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC034099

  7. NM_177265.5 → NP_796239.1  interferon-induced transmembrane protein 10 isoform 2

    See identical proteins and their annotated locations for NP_796239.1

    Status: VALIDATED

    Source sequence(s)
    AC034099
    Consensus CDS
    CCDS40191.1
    UniProtKB/Swiss-Prot
    Q8BR26
    Related
    ENSMUSP00000062728.9, ENSMUST00000059223.15
    Conserved Domains (1) summary
    pfam04505
    Location:53 → 81
    CD225; Interferon-induced transmembrane protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    141879572..141927526 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036153170.1 → XP_036009063.1  interferon-induced transmembrane protein 10 isoform X3

    Conserved Domains (1) summary
    pfam04505
    Location:53 → 81
    CD225; Interferon-induced transmembrane protein

  2. XM_011242002.3 → XP_011240304.1  interferon-induced transmembrane protein 10 isoform X1

    Conserved Domains (1) summary
    pfam04505
    Location:124 → 152
    CD225; Interferon-induced transmembrane protein

  3. XM_011242008.4 → XP_011240310.1  interferon-induced transmembrane protein 10 isoform X3

    See identical proteins and their annotated locations for XP_011240310.1

    UniProtKB/Swiss-Prot
    Q8BR26
    Conserved Domains (1) summary
    pfam04505
    Location:53 → 81
    CD225; Interferon-induced transmembrane protein

  4. XM_011242010.3 → XP_011240312.1  interferon-induced transmembrane protein 10 isoform X3

    See identical proteins and their annotated locations for XP_011240312.1

    UniProtKB/Swiss-Prot
    Q8BR26
    Conserved Domains (1) summary
    pfam04505
    Location:53 → 81
    CD225; Interferon-induced transmembrane protein

  5. XM_011242011.4 → XP_011240313.1  interferon-induced transmembrane protein 10 isoform X3

    See identical proteins and their annotated locations for XP_011240313.1

    UniProtKB/Swiss-Prot
    Q8BR26
    Conserved Domains (1) summary
    pfam04505
    Location:53 → 81
    CD225; Interferon-induced transmembrane protein

  6. XM_036153169.1 → XP_036009062.1  interferon-induced transmembrane protein 10 isoform X3

    Conserved Domains (1) summary
    pfam04505
    Location:53 → 81
    CD225; Interferon-induced transmembrane protein

  7. XM_011242012.1 → XP_011240314.1  interferon-induced transmembrane protein 10 isoform X3

    See identical proteins and their annotated locations for XP_011240314.1

    UniProtKB/Swiss-Prot
    Q8BR26
    Conserved Domains (1) summary
    pfam04505
    Location:53 → 81
    CD225; Interferon-induced transmembrane protein

  8. XM_011242006.4 → XP_011240308.1  interferon-induced transmembrane protein 10 isoform X2

    Conserved Domains (1) summary
    pfam04505
    Location:124 → 152
    CD225; Interferon-induced transmembrane protein
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BR26.3 GenPept UniProtKB/Swiss-Prot:Q8BR26

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