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A630089N07Rik RIKEN cDNA A630089N07 gene [ Mus musculus (house mouse) ]

Gene ID: 320586, updated on 17-Aug-2024

Summary

Official Symbol
A630089N07Rikprovided by MGI
Official Full Name
RIKEN cDNA A630089N07 geneprovided by MGI
Primary source
MGI:MGI:2444323
See related
Ensembl:ENSMUSG00000116673 AllianceGenome:MGI:2444323
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Is expressed in limb mesenchyme. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

See A630089N07Rik in Genome Data Viewer
Location:
16 C4; 16 57.82 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (97863712..97883639, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (98062512..98082439, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA C030010L15 gene Neighboring gene RIKEN cDNA B230307C23 gene Neighboring gene STARR-positive B cell enhancer ABC_E9939 Neighboring gene vomeronasal 2, receptor, pseudogene 112 Neighboring gene STARR-seq mESC enhancer starr_41643 Neighboring gene STARR-seq mESC enhancer starr_41645 Neighboring gene predicted gene, 53925

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015491.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AK042413
    Related
    ENSMUST00000231268.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    97863712..97883639 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)