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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001252105.2 → NP_001239034.1 calcium-dependent secretion activator 2 isoform 2
See identical proteins and their annotated locations for NP_001239034.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon in the central coding region, compared to variant 1, resulting in an isoform (2, also known as CAPS2a) that is shorter than isoform 1.
- Source sequence(s)
-
AC153636, AC153639, AC153831, AC155850, AC167725
- Consensus CDS
-
CCDS57412.1
- UniProtKB/TrEMBL
-
E9Q835
- Related
- ENSMUSP00000111015.3, ENSMUST00000115358.9
- Conserved Domains (4) summary
-
- smart00239
Location:369 → 452
- C2; Protein kinase C conserved region 2 (CalB)
- cd01234
Location:485 → 604
- PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
- pfam00169
Location:493 → 592
- PH; PH domain
- pfam06292
Location:802 → 902
- DUF1041; Domain of Unknown Function (DUF1041)
-
NM_001252106.2 → NP_001239035.1 calcium-dependent secretion activator 2 isoform 3
See identical proteins and their annotated locations for NP_001239035.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks two alternate in-frame exons in the central coding region, but includes an additional in-frame exon in the 3' coding region, compared to variant 1. The encoded isoform (3, also known as CAPS2c) is shorter than isoform 1.
- Source sequence(s)
-
AC153636, AC153639, AC153831, AC155850, AC167725
- UniProtKB/TrEMBL
- A4PI82, E9Q835
- Conserved Domains (4) summary
-
- smart00239
Location:369 → 452
- C2; Protein kinase C conserved region 2 (CalB)
- cd01234
Location:485 → 611
- PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
- pfam00169
Location:493 → 558
- PH; PH domain
- pfam06292
Location:735 → 835
- DUF1041; Domain of Unknown Function (DUF1041)
-
NM_001252107.2 → NP_001239036.1 calcium-dependent secretion activator 2 isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks several exons in the central and 3' coding regions, but includes an alternate 3' exon and thus differs in its 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (4, also known as CAPS2d) has a distinct and significantly shorter C-terminus, compared to isoform 1.
- Source sequence(s)
-
AC153636, AC153831, AC155850, AC167725
- Consensus CDS
-
CCDS57413.1
- UniProtKB/TrEMBL
-
A4PI83
- Related
- ENSMUSP00000111013.3, ENSMUST00000115356.3
- Conserved Domains (3) summary
-
- smart00239
Location:369 → 452
- C2; Protein kinase C conserved region 2 (CalB)
- cd01234
Location:485 → 604
- PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
- pfam00169
Location:493 → 592
- PH; PH domain
-
NM_001252108.2 → NP_001239037.1 calcium-dependent secretion activator 2 isoform 5
See identical proteins and their annotated locations for NP_001239037.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) lacks several exons in the central and 3' coding regions, but includes an alternate 3' exon and thus differs in its 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (5, also known as CAPS2e) has a distinct and significantly shorter C-terminus, compared to isoform 1.
- Source sequence(s)
-
AC153636, AC153831, AC155850, AC167725
- UniProtKB/TrEMBL
- A4PI83, A4PI84
- Conserved Domains (3) summary
-
- smart00239
Location:369 → 452
- C2; Protein kinase C conserved region 2 (CalB)
- cd01234
Location:485 → 604
- PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
- pfam00169
Location:493 → 592
- PH; PH domain
-
NM_001252109.1 → NP_001239038.1 calcium-dependent secretion activator 2 isoform 6
See identical proteins and their annotated locations for NP_001239038.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) lacks several exons in the central and 3' coding regions, but includes an alternate 3' exon and thus differs in its 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (6, also known as CAPS2f) has a distinct and significantly shorter C-terminus, compared to isoform 1.
- Source sequence(s)
-
AB291946, AC153636
- UniProtKB/TrEMBL
-
A4PI80
-
NM_001252110.2 → NP_001239039.1 calcium-dependent secretion activator 2 isoform 7
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) lacks three in-frame exons in the central coding region, but includes an additional in-frame exon in the 3' coding region, compared to variant 1. The encoded isoform (7) is shorter than isoform 1.
- Source sequence(s)
-
AC153636, AC153639, AC153831, AC155850, AC167725
- Consensus CDS
-
CCDS57411.1
- UniProtKB/TrEMBL
-
A0A0M3HEP6
- Related
- ENSMUSP00000111018.3, ENSMUST00000115361.9
- Conserved Domains (4) summary
-
- smart00239
Location:369 → 452
- C2; Protein kinase C conserved region 2 (CalB)
- cd01234
Location:485 → 604
- PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
- pfam00169
Location:493 → 592
- PH; PH domain
- pfam06292
Location:802 → 892
- DUF1041; Domain of Unknown Function (DUF1041)
-
NM_001403608.1 → NP_001390537.1 calcium-dependent secretion activator 2 isoform 8
Status: VALIDATED
- Source sequence(s)
-
AC153636, AC153639, AC153831, AC155850, AC167725
-
NM_001403630.1 → NP_001390559.1 calcium-dependent secretion activator 2 isoform 9
Status: VALIDATED
- Source sequence(s)
-
AC153636, AC153639, AC153831, AC155850, AC167725
- UniProtKB/Swiss-Prot
- O08903, Q66JM7, Q6PCL7, Q76I88, Q7TMM6, Q80ZV8, Q8BL25, Q8BY04, Q8BYR5, Q8K3K6
- Related
- ENSMUSP00000064876.9, ENSMUST00000069074.14
-
NM_153163.5 → NP_694803.3 calcium-dependent secretion activator 2 isoform 1
See identical proteins and their annotated locations for NP_694803.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1, also known as CAPS2b).
- Source sequence(s)
-
AC153636, AC153639, AC153831, AC155850, AC167725
- Consensus CDS
-
CCDS39439.1
- UniProtKB/TrEMBL
- A4PI81, E9Q835
- Related
- ENSMUSP00000018122.8, ENSMUST00000018122.14
- Conserved Domains (4) summary
-
- smart00239
Location:369 → 452
- C2; Protein kinase C conserved region 2 (CalB)
- cd01234
Location:485 → 604
- PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
- pfam00169
Location:493 → 592
- PH; PH domain
- pfam06292
Location:802 → 902
- DUF1041; Domain of Unknown Function (DUF1041)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000072.7 Reference GRCm39 C57BL/6J
- Range
-
23262765..23840662 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036166226.1 → XP_036022119.1 calcium-dependent secretion activator 2 isoform X7
- UniProtKB/TrEMBL
-
A0A0M3HEP6
- Conserved Domains (3) summary
-
- smart00239
Location:369 → 452
- C2; Protein kinase C conserved region 2 (CalB)
- cd01234
Location:485 → 604
- PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
- pfam06292
Location:802 → 892
- DUF1041; Domain of Unknown Function (DUF1041)
-
XM_006505111.3 → XP_006505174.1 calcium-dependent secretion activator 2 isoform X5
- UniProtKB/TrEMBL
-
A0A0M3HEP6
- Conserved Domains (3) summary
-
- smart00239
Location:369 → 452
- C2; Protein kinase C conserved region 2 (CalB)
- cd01234
Location:485 → 604
- PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
- pfam06292
Location:802 → 890
- DUF1041; Domain of Unknown Function (DUF1041)
-
XM_030255457.2 → XP_030111317.1 calcium-dependent secretion activator 2 isoform X13
- UniProtKB/TrEMBL
-
A0A0M3HEP6
- Conserved Domains (3) summary
-
- smart00239
Location:369 → 452
- C2; Protein kinase C conserved region 2 (CalB)
- cd01234
Location:485 → 604
- PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
- pfam06292
Location:802 → 893
- DUF1041; Domain of Unknown Function (DUF1041)
-
XM_006505109.3 → XP_006505172.1 calcium-dependent secretion activator 2 isoform X3
- UniProtKB/TrEMBL
-
A0A0M3HEP6
- Conserved Domains (3) summary
-
- smart00239
Location:369 → 452
- C2; Protein kinase C conserved region 2 (CalB)
- cd01234
Location:485 → 604
- PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
- pfam06292
Location:802 → 893
- DUF1041; Domain of Unknown Function (DUF1041)
-
XM_006505115.3 → XP_006505178.1 calcium-dependent secretion activator 2 isoform X12
- UniProtKB/TrEMBL
-
E9Q835
- Conserved Domains (3) summary
-
- smart00239
Location:369 → 452
- C2; Protein kinase C conserved region 2 (CalB)
- cd01234
Location:485 → 604
- PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
- pfam06292
Location:802 → 897
- DUF1041; Domain of Unknown Function (DUF1041)
-
XM_036166228.1 → XP_036022121.1 calcium-dependent secretion activator 2 isoform X16
- UniProtKB/TrEMBL
-
E9Q835
- Conserved Domains (3) summary
-
- smart00239
Location:369 → 452
- C2; Protein kinase C conserved region 2 (CalB)
- cd01234
Location:485 → 604
- PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
- pfam06292
Location:802 → 899
- DUF1041; Domain of Unknown Function (DUF1041)
-
XM_036166227.1 → XP_036022120.1 calcium-dependent secretion activator 2 isoform X10
- UniProtKB/TrEMBL
-
E9Q835
- Conserved Domains (3) summary
-
- smart00239
Location:369 → 452
- C2; Protein kinase C conserved region 2 (CalB)
- cd01234
Location:485 → 604
- PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
- pfam06292
Location:802 → 899
- DUF1041; Domain of Unknown Function (DUF1041)
-
XM_006505110.3 → XP_006505173.1 calcium-dependent secretion activator 2 isoform X4
See identical proteins and their annotated locations for XP_006505173.1
- UniProtKB/TrEMBL
-
E9Q835
- Conserved Domains (3) summary
-
- smart00239
Location:369 → 452
- C2; Protein kinase C conserved region 2 (CalB)
- cd01234
Location:485 → 604
- PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
- pfam06292
Location:802 → 897
- DUF1041; Domain of Unknown Function (DUF1041)
-
XM_006505108.3 → XP_006505171.1 calcium-dependent secretion activator 2 isoform X2
- UniProtKB/TrEMBL
-
E9Q835
- Conserved Domains (3) summary
-
- smart00239
Location:369 → 452
- C2; Protein kinase C conserved region 2 (CalB)
- cd01234
Location:485 → 604
- PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
- pfam06292
Location:802 → 897
- DUF1041; Domain of Unknown Function (DUF1041)
-
XM_006505113.3 → XP_006505176.1 calcium-dependent secretion activator 2 isoform X8
- UniProtKB/TrEMBL
-
E9Q835
- Conserved Domains (3) summary
-
- smart00239
Location:369 → 452
- C2; Protein kinase C conserved region 2 (CalB)
- cd01234
Location:485 → 604
- PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
- pfam06292
Location:802 → 900
- DUF1041; Domain of Unknown Function (DUF1041)
-
XM_017321641.3 → XP_017177130.1 calcium-dependent secretion activator 2 isoform X15
- UniProtKB/TrEMBL
-
E9Q835
- Conserved Domains (3) summary
-
- smart00239
Location:369 → 452
- C2; Protein kinase C conserved region 2 (CalB)
- cd01234
Location:485 → 604
- PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
- pfam06292
Location:802 → 900
- DUF1041; Domain of Unknown Function (DUF1041)
-
XM_017321640.3 → XP_017177129.1 calcium-dependent secretion activator 2 isoform X11
- UniProtKB/TrEMBL
-
E9Q835
- Conserved Domains (3) summary
-
- smart00239
Location:369 → 452
- C2; Protein kinase C conserved region 2 (CalB)
- cd01234
Location:485 → 604
- PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
- pfam06292
Location:802 → 900
- DUF1041; Domain of Unknown Function (DUF1041)
-
XM_006505107.3 → XP_006505170.1 calcium-dependent secretion activator 2 isoform X1
- UniProtKB/TrEMBL
-
E9Q835
- Conserved Domains (3) summary
-
- smart00239
Location:369 → 452
- C2; Protein kinase C conserved region 2 (CalB)
- cd01234
Location:485 → 604
- PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
- pfam06292
Location:802 → 900
- DUF1041; Domain of Unknown Function (DUF1041)
-
XM_006505114.4 → XP_006505177.1 calcium-dependent secretion activator 2 isoform X9
- UniProtKB/TrEMBL
-
E9Q835
- Conserved Domains (3) summary
-
- smart00239
Location:369 → 452
- C2; Protein kinase C conserved region 2 (CalB)
- cd01234
Location:485 → 604
- PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
- pfam06292
Location:802 → 900
- DUF1041; Domain of Unknown Function (DUF1041)