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E230029C05Rik RIKEN cDNA E230029C05 gene [ Mus musculus (house mouse) ]

Gene ID: 319711, updated on 22-Oct-2024

Summary

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Official Symbol
E230029C05Rikprovided by MGI
Official Full Name
RIKEN cDNA E230029C05 geneprovided by MGI
Primary source
MGI:MGI:2442580
See related
Ensembl:ENSMUSG00000097585 AllianceGenome:MGI:2442580
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm26529; Gm32094; B230337J15
Expression
Broad expression in spleen adult (RPKM 3.1), testis adult (RPKM 2.3) and 26 other tissues See more
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Genomic context

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See E230029C05Rik in Genome Data Viewer
Location:
7 D3; 7 50.46 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (89678367..89698279)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (90029159..90049071)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene heat shock protein nuclear import factor Neighboring gene STARR-positive B cell enhancer ABC_E2241 Neighboring gene STARR-seq mESC enhancer starr_19498 Neighboring gene STARR-seq mESC enhancer starr_19499 Neighboring gene STARR-seq mESC enhancer starr_19500 Neighboring gene STARR-positive B cell enhancer ABC_E4947 Neighboring gene Eed upstream regulatory region Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:97129229-97129338 Neighboring gene embryonic ectoderm development Neighboring gene STARR-seq mESC enhancer starr_19501 Neighboring gene STARR-seq mESC enhancer starr_19504 Neighboring gene predicted gene, 32164 Neighboring gene RIKEN cDNA 2310010J17 gene Neighboring gene basic transcription factor 3, pseudogene 5 Neighboring gene STARR-positive B cell enhancer ABC_E4948 Neighboring gene phosphatidylinositol binding clathrin assembly protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110364.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK046045, AK165252, AW489474
    Related
    ENSMUST00000208266.4

  2. NR_110365.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses alternative splice sites in three exons, compared to variant 1
    Source sequence(s)
    AC130210, AC161229, AK046045, AK165252, AW489474, BE650787
    Related
    ENSMUST00000208547.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    89678367..89698279
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_015614.1: Suppressed sequence

    Description
    NR_015614.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript, which appears to be incompletely processed at its 3' end.
Nucleotide Protein Strain
Heading Accession and Version

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