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ITPK1-AS1 ITPK1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 319085, updated on 8-Nov-2023

Summary

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Official Symbol
ITPK1-AS1provided by HGNC
Official Full Name
ITPK1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:20132
See related
Ensembl:ENSG00000258730 AllianceGenome:HGNC:20132
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ITPK1AS; C14orf85; ITPK1-AS; NCRNA00203
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Genomic context

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Location:
14q32.12
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (93067452..93072152)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (87299451..87304150)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (93533797..93538497)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:93403665-93404166 Neighboring gene uncharacterized LOC124903366 Neighboring gene chromogranin A Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:93418215-93418715 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:93428049-93428613 Neighboring gene inositol-tetrakisphosphate 1-kinase Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:93439689-93440278 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:93440279-93440866 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:93440867-93441454 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:93459858-93460540 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:93465116-93465630 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:93472927-93473838 Neighboring gene Sharpr-MPRA regulatory region 15213 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:93475437-93475938 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:93477163-93477664 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:93477665-93478164 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:93480925-93481426 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:93481427-93481926 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:93482386-93482886 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:93484819-93485602 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:93485603-93486386 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:93500760-93501455 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:93506655-93507584 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:93511809-93512368 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:93515290-93515917 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:93516545-93517172 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:93522559-93523246 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:93543288-93543801 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:93544610-93545178 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:93550988-93551611 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:93554107-93554728 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:93558517-93559024 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:93564664-93565656 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:93604409-93604908 Neighboring gene cytochrome b5 type A pseudogene 3 Neighboring gene modulator of apoptosis 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • ITPK1 antisense RNA (non-protein coding)
  • ITPK1 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002808.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL117192
    Related
    ENST00000553639.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    93067452..93072152
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187601.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    182014..186714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    87299451..87304150
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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