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CG31875 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 318996, updated on 2-Nov-2024

Summary

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Official Symbol
CG31875provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0051875
Locus tag
Dmel_CG31875
See related
AllianceGenome:FB:FBgn0051875
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BcDNA:AT29184; CG5831; Desr; Dmel\CG31875; FBgn0051875
Summary
Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of DNA-templated transcription and regulation of transcription by RNA polymerase II. Predicted to be part of histone deacetylase complex and transcription regulator complex. Is expressed in central brain primordium; embryonic brain; larval ventral nerve cord; organism; and ventral nerve cord primordium. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See CG31875 in Genome Data Viewer
Location:
30F5-30F5; 2-38 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (9995561..10002736, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (9995561..10002736, complement)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L13 Neighboring gene long non-coding RNA:CR13130 Neighboring gene big brain Neighboring gene Sister of Yb Neighboring gene antisense RNA:CR44873 Neighboring gene Nucleosome-destabilizing factor Neighboring gene Translocation protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Confirming candidate genes for longevity by RT-qPCR using two different genetic backgrounds and selection methods. Wit J, et al. J Insect Physiol, 2013 Mar. PMID 23357090
  2. Frequent recent origination of brain genes shaped the evolution of foraging behavior in Drosophila. Chen S, et al. Cell Rep, 2012 Feb 23. PMID 22832161, Free PMC Article
  3. FACS purification and transcriptome analysis of drosophila neural stem cells reveals a role for Klumpfuss in self-renewal. Berger C, et al. Cell Rep, 2012 Aug 30. PMID 22884370, Free PMC Article
  4. Behavioral screening of sleep-promoting effects of human intestinal and food-associated bacteria on Drosophila melanogaster. Ko T, et al. Genes Cells, 2023 Jun. PMID 36914986, Free PMC Article
  5. Transcriptome analysis of FOXO-dependent hypoxia gene expression identifies Hipk as a regulator of low oxygen tolerance in Drosophila. Ding K, et al. G3 (Bethesda), 2022 Dec 1. PMID 36200850, Free PMC Article

See all (28) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables transcription corepressor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of histone deacetylase complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of transcription regulator complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG31875-PA
CG31875-PB
CG31875-PC
CG31875-PD
drosophila Elm2-Sant retrogene

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    9995561..10002736 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001201836.2 → NP_001188765.1  uncharacterized protein Dmel_CG31875, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001188765.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8IPD6, Q8T8U8
    Conserved Domains (1) summary
    pfam01448
    Location:18 → 63
    ELM2; ELM2 domain

  2. NM_001259029.2 → NP_001245958.1  uncharacterized protein Dmel_CG31875, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001245958.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8IPD6, Q8T8U8
    Conserved Domains (1) summary
    pfam01448
    Location:18 → 63
    ELM2; ELM2 domain

  3. NM_001201837.2 → NP_001188766.1  uncharacterized protein Dmel_CG31875, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001188766.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8IPD6, Q8T8U8
    Conserved Domains (1) summary
    pfam01448
    Location:18 → 63
    ELM2; ELM2 domain

  4. NM_164884.1 → NP_723509.1  uncharacterized protein Dmel_CG31875, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_723509.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8IPD6, Q8T8U8
    Related
    FBpp0079563, FBtr0079973
    Conserved Domains (1) summary
    pfam01448
    Location:18 → 63
    ELM2; ELM2 domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8IPD6 Q8IPD6
Q8T8U8 Q8T8U8

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