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CG4119 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 31481, updated on 2-Nov-2024

Summary

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Official Symbol
CG4119provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0028474
Locus tag
Dmel_CG4119
See related
AllianceGenome:FB:FBgn0028474
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BcDNA.LD23634; BcDNA:LD23634; cg4119; Dmel\CG4119
Summary
Predicted to enable mRNA binding activity. Involved in regulation of alternative mRNA splicing, via spliceosome. Part of precatalytic spliceosome. Is expressed in organism and spermatozoon. Orthologous to human RBM25 (RNA binding motif protein 25). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See CG4119 in Genome Data Viewer
Location:
5A10-5A11; 1-12 cM
Exon count:
7
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (5666052..5670652)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (5560085..5564685)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene Otopetrin-like c Neighboring gene antisense RNA:CR45520 Neighboring gene Sirtuin 4 Neighboring gene Rab18 Neighboring gene Ribosomal protein L35

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables mRNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IC
Inferred by Curator
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome HMP PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in nucleus IC
Inferred by Curator
more info
 PubMed 
part_of precatalytic spliceosome HDA PubMed 

General protein information

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Preferred Names
uncharacterized protein
Names
CG4119-PA
CG4119-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    5666052..5670652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001297970.1 → NP_001284899.1  uncharacterized protein Dmel_CG4119, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001284899.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9V3Y5
    Conserved Domains (2) summary
    smart00311
    Location:917 → 988
    PWI; PWI, domain in splicing factors
    cd12446
    Location:62 → 136
    RRM_RBM25; RNA recognition motif in eukaryotic RNA-binding protein 25 and similar proteins

  2. NM_132014.3 → NP_572242.1  uncharacterized protein Dmel_CG4119, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_572242.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9V3Y5
    Related
    FBpp0070765
    Conserved Domains (2) summary
    smart00311
    Location:917 → 988
    PWI; PWI, domain in splicing factors
    cd12446
    Location:62 → 136
    RRM_RBM25; RNA recognition motif in eukaryotic RNA-binding protein 25 and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9V3Y5 Q9V3Y5

Gene LinkOut

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