U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Gpatch2l G patch domain containing 2-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 314325, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Symbol
Gpatch2lprovided by RGD
Full Name
G patch domain containing 2-likeprovided by RGD
Primary source
RGD:1308907
See related
EnsemblRapid:ENSRNOG00000010227 AllianceGenome:RGD:1308907
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1308907
Summary
Predicted to be active in nucleus. Orthologous to human GPATCH2L (G-patch domain containing 2 like). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Adrenal (RPKM 77.1), Thymus (RPKM 61.7) and 9 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Gpatch2l in Genome Data Viewer
Location:
6q31
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (111614344..111666603)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (105883383..105935644)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (110093767..110228943)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene transforming growth factor, beta 3 Neighboring gene intraflagellar transport 43 Neighboring gene uncharacterized LOC134479452 Neighboring gene estrogen-related receptor beta Neighboring gene uncharacterized LOC120103580

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
G patch domain-containing protein 2-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134559.2 → NP_001128031.1  G patch domain-containing protein 2-like

    See identical proteins and their annotated locations for NP_001128031.1

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000006
    UniProtKB/TrEMBL
    A0A8I6A8X2, A6JE58, D3ZUP4
    Related
    ENSRNOP00000084168.2, ENSRNOT00000114075.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    111614344..111666603
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008764794.3 → XP_008763016.1  G patch domain-containing protein 2-like isoform X3

    UniProtKB/TrEMBL
    A0A8I5ZR09, A0A8I6A8X2
    Related
    ENSRNOP00000080573.1, ENSRNOT00000119252.2

  2. XM_039112311.2 → XP_038968239.1  G patch domain-containing protein 2-like isoform X4

    UniProtKB/TrEMBL
    A0A8I6A8X2

  3. XM_063261943.1 → XP_063118013.1  G patch domain-containing protein 2-like isoform X6

  4. XM_039112310.2 → XP_038968238.1  G patch domain-containing protein 2-like isoform X2

    UniProtKB/TrEMBL
    A0A8I5ZWN4, A6JE59
    Related
    ENSRNOP00000111852.1, ENSRNOT00000167125.1

  5. XM_039112312.2 → XP_038968240.1  G patch domain-containing protein 2-like isoform X5

    UniProtKB/TrEMBL
    A0A8I6A8X2

  6. XM_063261944.1 → XP_063118014.1  G patch domain-containing protein 2-like isoform X7

  7. XM_039112309.1 → XP_038968237.1  G patch domain-containing protein 2-like isoform X1

    UniProtKB/TrEMBL
    A0A8I6A8X2, A6JE58, D3ZUP4

RNA

  1. XR_001838169.3 RNA Sequence

  2. XR_005505526.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools