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Rsbn1l round spermatid basic protein 1-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 311987, updated on 10-Oct-2024

Summary

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Official Symbol
Rsbn1lprovided by RGD
Official Full Name
round spermatid basic protein 1-likeprovided by RGD
Primary source
RGD:1308748
See related
EnsemblRapid:ENSRNOG00000013431 AllianceGenome:RGD:1308748
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1308748
Summary
Predicted to enable metal ion binding activity and oxidoreductase activity. Predicted to be active in nucleus. Orthologous to human RSBN1L (round spermatid basic protein 1 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Thymus (RPKM 117.2), Spleen (RPKM 101.9) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Rsbn1l in Genome Data Viewer
Location:
4q11
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (15014405..15093287)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (14138076..14203972)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (10748745..10809142)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase, non-receptor type 12 Neighboring gene uncharacterized LOC120102213 Neighboring gene Alu-mediated CDKN1A/p21 transcriptional regulator Neighboring gene transmembrane protein 60 Neighboring gene putative homeodomain transcription factor 2 Neighboring gene uncharacterized LOC134486554

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables dioxygenase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
lysine-specific demethylase RSBN1L
Names
round spermatid basic protein 1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135872.1 → NP_001129344.1  lysine-specific demethylase RSBN1L

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000004
    UniProtKB/TrEMBL
    A6K5C7, D3ZZH7
    Related
    ENSRNOP00000051335.3, ENSRNOT00000046142.5

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    15014405..15093287
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063285957.1 → XP_063142027.1  lysine-specific demethylase RSBN1L isoform X1

    UniProtKB/TrEMBL
    A0A8I6AD71
    Related
    ENSRNOP00000089742.1, ENSRNOT00000094077.2

  2. XM_063285958.1 → XP_063142028.1  lysine-specific demethylase RSBN1L isoform X2

    Related
    ENSRNOP00000082614.2, ENSRNOT00000108690.2

  3. XM_039107499.2 → XP_038963427.1  lysine-specific demethylase RSBN1L isoform X3

    UniProtKB/TrEMBL
    A0A8I6G9P4, A6K5C7

  4. XM_063285962.1 → XP_063142032.1  lysine-specific demethylase RSBN1L isoform X6

  5. XM_063285960.1 → XP_063142030.1  lysine-specific demethylase RSBN1L isoform X4

  6. XM_039107500.2 → XP_038963428.1  lysine-specific demethylase RSBN1L isoform X5

    UniProtKB/TrEMBL
    A6K5C8

  7. XM_063285961.1 → XP_063142031.1  lysine-specific demethylase RSBN1L isoform X6

  8. XM_063285963.1 → XP_063142033.1  lysine-specific demethylase RSBN1L isoform X7

Nucleotide Protein Strain
Heading Accession and Version

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