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CG11417 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 31083, updated on 2-Nov-2024

Summary

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Official Symbol
CG11417provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0024364
Locus tag
Dmel_CG11417
See related
AllianceGenome:FB:FBgn0024364
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG11417; EG:8D8.4
Summary
Predicted to enable RNA binding activity. Predicted to be involved in rRNA processing. Predicted to be located in nucleus. Is expressed in several structures, including anterior endoderm; embryonic/larval midgut primordium; gut section; larval muscle cell; and mesoderm. Orthologous to human ESF1 (ESF1 nucleolar pre-rRNA processing protein homolog). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

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See CG11417 in Genome Data Viewer
Location:
1F4-1F4; 1-0.1 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (1354014..1356473)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (1248047..1250506)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene mitochondrial poly(A) polymerase Neighboring gene Tetraspanin 2A Neighboring gene uncharacterized protein Neighboring gene pan gu Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. Tiwari P, et al. PLoS One, 2015. PMID 26488612, Free PMC Article
  2. Hrp59, an hnRNP M protein in Chironomus and Drosophila, binds to exonic splicing enhancers and is required for expression of a subset of mRNAs. Kiesler E, et al. J Cell Biol, 2005 Mar 28. PMID 15781475, Free PMC Article
  3. Proximity labeling reveals novel interactomes in live Drosophila tissue. Mannix KM, et al. Development, 2019 Jul 18. PMID 31208963, Free PMC Article
  4. Dynamics of Dark-Fly Genome Under Environmental Selections. Izutsu M, et al. G3 (Bethesda), 2015 Dec 4. PMID 26637434, Free PMC Article
  5. Neutral Competition for Drosophila Follicle and Cyst Stem Cell Niches Requires Vesicle Trafficking Genes. Cook MS, et al. Genetics, 2017 Jul. PMID 28512187, Free PMC Article

See all (34) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in rRNA processing IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG11417-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    1354014..1356473
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_130550.3 → NP_569906.1  uncharacterized protein Dmel_CG11417 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_569906.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O46307, Q8MR29
    Related
    FBpp0070205
    Conserved Domains (2) summary
    COG5638
    Location:44 → 763
    COG5638; Uncharacterized conserved protein [Function unknown]
    pfam08159
    Location:683 → 711
    NUC153; NUC153 domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O46307 O46307
Q8MR29 Q8MR29

Gene LinkOut

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