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Tmem161b transmembrane protein 161B [ Rattus norvegicus (Norway rat) ]

Gene ID: 309953, updated on 2-Nov-2024

Summary

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Symbol
Tmem161bprovided by RGD
Full Name
transmembrane protein 161Bprovided by RGD
Primary source
RGD:1309660
See related
EnsemblRapid:ENSRNOG00000032414 AllianceGenome:RGD:1309660
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1309660
Summary
Predicted to be involved in regulation of cardiac muscle cell action potential and regulation of heart rate. Predicted to be located in membrane. Orthologous to human TMEM161B (transmembrane protein 161B). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Heart (RPKM 131.2), Kidney (RPKM 116.6) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Tmem161b in Genome Data Viewer
Location:
2q11
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (16447094..16529359)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (14714451..14793809)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (12252522..12550368)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108349917 Neighboring gene stathmin like, pseudogene 4 Neighboring gene uncharacterized LOC102554306 Neighboring gene uncharacterized LOC120100661

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in regulation of cardiac muscle cell action potential ISO
Inferred from Sequence Orthology
more info
  
involved_in regulation of heart rate ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transmembrane protein 161B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001433109.1 → NP_001420038.1  transmembrane protein 161B isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002

  2. NM_001433110.1 → NP_001420039.1  transmembrane protein 161B isoform b

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002

  3. NM_001433111.1 → NP_001420040.1  transmembrane protein 161B isoform c

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002

  4. NM_001433112.1 → NP_001420041.1  transmembrane protein 161B isoform d

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002

  5. NM_001433113.1 → NP_001420042.1  transmembrane protein 161B isoform e

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002

  6. NM_001433114.1 → NP_001420043.1  transmembrane protein 161B isoform e

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002

  7. NM_001433115.1 → NP_001420044.1  transmembrane protein 161B isoform e

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    16447094..16529359
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063282659.1 → XP_063138729.1  transmembrane protein 161B isoform X1

    UniProtKB/TrEMBL
    A0A8I5Y238
    Related
    ENSRNOP00000078226.1, ENSRNOT00000108171.2

  2. XM_063282668.1 → XP_063138738.1  transmembrane protein 161B isoform X3

    UniProtKB/TrEMBL
    A0A8I5ZR74
    Related
    ENSRNOP00000049795.6, ENSRNOT00000050072.7

  3. XM_063282661.1 → XP_063138731.1  transmembrane protein 161B isoform X3

    UniProtKB/TrEMBL
    A0A8I5ZR74
    Related
    ENSRNOP00000080669.1, ENSRNOT00000102942.2

  4. XM_063282667.1 → XP_063138737.1  transmembrane protein 161B isoform X6

  5. XM_039103416.2 → XP_038959344.1  transmembrane protein 161B isoform X7

    Conserved Domains (1) summary
    pfam10268
    Location:2 → 305
    Tmemb_161AB; Predicted transmembrane protein 161AB

  6. XM_063282673.1 → XP_063138743.1  transmembrane protein 161B isoform X9

  7. XM_063282662.1 → XP_063138732.1  transmembrane protein 161B isoform X4

  8. XM_063282672.1 → XP_063138742.1  transmembrane protein 161B isoform X8

  9. XM_063282665.1 → XP_063138735.1  transmembrane protein 161B isoform X5

  10. XM_063282663.1 → XP_063138733.1  transmembrane protein 161B isoform X5

  11. XM_063282660.1 → XP_063138730.1  transmembrane protein 161B isoform X2

    UniProtKB/TrEMBL
    A0A8I5Y238

  12. XM_063282666.1 → XP_063138736.1  transmembrane protein 161B isoform X5

  13. XM_063282664.1 → XP_063138734.1  transmembrane protein 161B isoform X5

  14. XM_063282669.1 → XP_063138739.1  transmembrane protein 161B isoform X8

  15. XM_063282671.1 → XP_063138741.1  transmembrane protein 161B isoform X8

  16. XM_063282670.1 → XP_063138740.1  transmembrane protein 161B isoform X8

RNA

  1. XR_005500479.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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